EnhancerDB
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  3. rs139253224[chr1:226890248]
Enhancers that have rs139253224[chr1:226890248]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 226890098 226890374 vista5382
VISTA
Transcript factors that have rs139253224[chr1:226890248]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226890001 226890277 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21387232
chr1 226890001 226890277 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107876269
chr1 226890052 226890316 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21387233
chr1 226890052 226890316 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107876270
chr1 226890190 226890868 ZNF274 GTRD no Bone Marrow (K562) 107876271
chr1 226890190 226890868 ZNF274 GTRD no Bone Marrow (K562) 107876272
chr1 226890234 226890254 TP63 JASPAR yes 35835302
chr1 226890234 226890254 TP63 JASPAR yes 118472536
chr1 226890238 226890251 SCRT2 JASPAR yes 35835303
chr1 226890238 226890251 SCRT2 JASPAR yes 118472537
chr1 226890241 226890254 ZBTB18 JASPAR yes 35835304
chr1 226890241 226890254 ZBTB18 JASPAR yes 118472538
chr1 226890248 226890262 TLX1 JASPAR yes 35835305
chr1 226890248 226890262 TLX1 JASPAR yes 118472539
Genes associated with rs139253224[chr1:226890248], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More