EnhancerDB
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  3. rs142397220[chr19:2628473]
Enhancers that have rs142397220[chr19:2628473]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2605719 2641695 enh4960
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs142397220[chr19:2628473]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2625964 2628747 ZNF274 GTRD no Blood (GM12878) 21837909
chr19 2625964 2628747 ZNF274 GTRD no Blood (GM12878) 108363530
chr19 2625964 2628747 ZNF274 GTRD no Blood (GM12878) 108363531
chr19 2626048 2629160 ZNF274 GTRD no Blood (GM12878) 21837910
chr19 2626048 2629160 ZNF274 GTRD no Blood (GM12878) 108363532
chr19 2626048 2629160 ZNF274 GTRD no Blood (GM12878) 108363533
chr19 2626244 2628604 STAT3 GTRD no Blood (OCI-LY7) 21837911
chr19 2626244 2628604 STAT3 GTRD no Blood (OCI-LY7) 108363534
chr19 2626244 2628604 STAT3 GTRD no Blood (OCI-LY7) 108363535
chr19 2626323 2628509 ZNF274 GTRD no Blood (GM12878) 21837912
chr19 2626323 2628509 ZNF274 GTRD no Blood (GM12878) 108363536
chr19 2626323 2628509 ZNF274 GTRD no Blood (GM12878) 108363537
chr19 2626560 2628506 ZNF274 GTRD no Blood (GM12878) 21837914
chr19 2626560 2628506 ZNF274 GTRD no Blood (GM12878) 108363540
chr19 2626560 2628506 ZNF274 GTRD no Blood (GM12878) 108363541
chr19 2627048 2628595 TCF7L2 GTRD no Colon (HCT116) 21837925
chr19 2627048 2628595 TCF7L2 GTRD no Colon (HCT116) 108363557
chr19 2627048 2628595 TCF7L2 GTRD no Colon (HCT116) 108363558
chr19 2627083 2628487 ZNF274 GTRD no Blood (GM12878) 21837926
chr19 2627083 2628487 ZNF274 GTRD no Blood (GM12878) 108363559
chr19 2627083 2628487 ZNF274 GTRD no Blood (GM12878) 108363560
chr19 2627097 2628524 ZNF274 GTRD no Blood (GM12878) 21837927
chr19 2627097 2628524 ZNF274 GTRD no Blood (GM12878) 108363561
chr19 2627097 2628524 ZNF274 GTRD no Blood (GM12878) 108363562
chr19 2627156 2628543 P63 GTRD no Skin (Keratinocyte) 21837932
chr19 2627156 2628543 P63 GTRD no Skin (Keratinocyte) 108363569
chr19 2627156 2628543 P63 GTRD no Skin (Keratinocyte) 108363570
chr19 2627207 2628488 ZNF274 GTRD no Blood (GM12878) 21837939
chr19 2627207 2628488 ZNF274 GTRD no Blood (GM12878) 108363587
chr19 2627207 2628488 ZNF274 GTRD no Blood (GM12878) 108363588
chr19 2627227 2628529 TCF7L2 GTRD no Colon (HCT116) 21837948
chr19 2627227 2628529 TCF7L2 GTRD no Colon (HCT116) 108363606
chr19 2627227 2628529 TCF7L2 GTRD no Colon (HCT116) 108363607
chr19 2627269 2628502 ZNF274 GTRD no Bone Marrow (K562) 21837958
chr19 2627269 2628502 ZNF274 GTRD no Bone Marrow (K562) 108363642
chr19 2627269 2628502 ZNF274 GTRD no Bone Marrow (K562) 108363643
chr19 2628473 2628488 PRDM1 JASPAR yes 112085707
Genes associated with rs142397220[chr19:2628473], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More