EnhancerDB
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Enhancers that have rs1485394[chr12:53955485]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
chr12 53955466 53955638 vista13531
VISTA
Transcript factors that have rs1485394[chr12:53955485]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 21549439
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 108036194
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 21549440
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 108036195
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 21549441
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 108036196
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 21549442
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 108036197
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 21549443
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 108036198
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 21549444
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 108036199
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 21549445
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 108036200
chr12 53955240 53955664 TCF7L2 GTRD no Colon (HCT116) 21549446
chr12 53955240 53955664 TCF7L2 GTRD no Colon (HCT116) 108036201
chr12 53955252 53955736 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036202
chr12 53955263 53955919 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036203
chr12 53955283 53955823 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036204
chr12 53955285 53955881 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21549447
chr12 53955285 53955881 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108036205
chr12 53955289 53955865 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036206
chr12 53955312 53955816 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036207
chr12 53955316 53955856 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036208
chr12 53955327 53955847 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036209
chr12 53955328 53955812 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036210
chr12 53955335 53955679 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549448
chr12 53955335 53955679 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036211
chr12 53955361 53955737 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549449
chr12 53955361 53955737 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036212
chr12 53955367 53955750 FOSL2 UCSC Txn Factor no Conserved 108036213
chr12 53955367 53955750 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036214
chr12 53955378 53955668 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21549450
chr12 53955378 53955668 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108036215
chr12 53955378 53955736 JUN UCSC Txn Factor no Conserved 108036216
chr12 53955379 53955709 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549451
chr12 53955379 53955709 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036217
chr12 53955396 53955736 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549452
chr12 53955396 53955736 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036218
chr12 53955406 53955762 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108036219
chr12 53955409 53955689 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21549453
chr12 53955409 53955689 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108036220
chr12 53955412 53955699 JUND UCSC Txn Factor no Conserved 108036221
chr12 53955413 53955683 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036222
chr12 53955415 53955699 FOS UCSC Txn Factor no Conserved 108036223
chr12 53955415 53955699 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108036224
chr12 53955422 53955678 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036225
chr12 53955423 53955699 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21549454
chr12 53955423 53955699 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108036226
chr12 53955425 53955734 TCF12 UCSC Txn Factor no Conserved 108036227
chr12 53955425 53955734 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036228
chr12 53955437 53955693 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549455
chr12 53955437 53955693 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036229
chr12 53955440 53955676 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036230
chr12 53955441 53955705 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549456
chr12 53955441 53955705 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036231
chr12 53955445 53955815 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036232
chr12 53955469 53955619 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549457
chr12 53955469 53955619 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036233
chr12 53955479 53955487 FOXO3 JASPAR yes 82410024
chr12 53955479 53955487 FOXO3 JASPAR yes 120990978
chr12 53955481 53955497 NFYA JASPAR yes 82410025
chr12 53955481 53955497 NFYA JASPAR yes 120990979
chr12 53955483 53955677 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108036234
chr12 53955485 53955502 ZNF410 JASPAR yes 82410026
chr12 53955485 53955502 ZNF410 JASPAR yes 120990980
Genes associated with rs1485394[chr12:53955485], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More