EnhancerDB
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  3. rs28452849[chr1:19278635]
Enhancers that have rs28452849[chr1:19278635]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19278388 19278892 vista599
VISTA
Transcript factors that have rs28452849[chr1:19278635]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19277822 19279058 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802290
chr1 19278626 19278637 NFKB1 JASPAR yes 27165456
chr1 19278626 19278637 NFKB1 JASPAR yes 118242794
chr1 19278627 19278637 REL JASPAR yes 27165457
chr1 19278627 19278637 REL JASPAR yes 118242795
chr1 19278627 19278638 NFKB1 JASPAR yes 27165458
chr1 19278627 19278638 NFKB1 JASPAR yes 118242796
chr1 19278628 19278638 REL JASPAR yes 27165459
chr1 19278628 19278638 REL JASPAR yes 118242797
Genes associated with rs28452849[chr1:19278635], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More