EnhancerDB
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  3. rs28494875[chr16:88827172]
Enhancers that have rs28494875[chr16:88827172]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr16 88826966 88827318 vista23511
VISTA
Transcript factors that have rs28494875[chr16:88827172]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88823154 88827493 TCF7L2 GTRD no Colon (HCT116) 21736869
chr16 88823154 88827493 TCF7L2 GTRD no Colon (HCT116) 108223300
chr16 88823627 88827542 TCF7L2 GTRD no Colon (HCT116) 21736870
chr16 88823627 88827542 TCF7L2 GTRD no Colon (HCT116) 108223301
chr16 88823651 88829212 TCF7L2 GTRD no Colon (HCT116) 21736871
chr16 88823651 88829212 TCF7L2 GTRD no Colon (HCT116) 108223302
chr16 88825512 88827616 ZNF143 GTRD no Epithelial (MCF-7) 21736872
chr16 88825512 88827616 ZNF143 GTRD no Epithelial (MCF-7) 108223303
chr16 88825532 88829851 POLR2A UCSC Txn Factor no Conserved 108223304
chr16 88825564 88827599 ZNF143 GTRD no Epithelial (MCF-7) 21736873
chr16 88825564 88827599 ZNF143 GTRD no Epithelial (MCF-7) 108223305
chr16 88825575 88827571 ZNF143 GTRD no Epithelial (MCF-7) 21736874
chr16 88825575 88827571 ZNF143 GTRD no Epithelial (MCF-7) 108223306
chr16 88826082 88827181 TCF7L2 GTRD no Colon (HCT116) 21736877
chr16 88826082 88827181 TCF7L2 GTRD no Colon (HCT116) 108223310
chr16 88826511 88827604 ZNF143 GTRD no Epithelial (MCF-7) 21736878
chr16 88826511 88827604 ZNF143 GTRD no Epithelial (MCF-7) 108223311
chr16 88826534 88827656 TCF7L2 GTRD no Colon (HCT116) 21736879
chr16 88826534 88827656 TCF7L2 GTRD no Colon (HCT116) 108223312
chr16 88826586 88827567 ZNF143 GTRD no Epithelial (MCF-7) 21736880
chr16 88826586 88827567 ZNF143 GTRD no Epithelial (MCF-7) 108223313
chr16 88826854 88827455 ZNF143 GTRD no Epithelial (MCF-7) 21736883
chr16 88826854 88827455 ZNF143 GTRD no Epithelial (MCF-7) 108223316
chr16 88826892 88827418 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736884
chr16 88826892 88827418 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223317
chr16 88826892 88827420 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736885
chr16 88826892 88827420 E2F1 UCSC Txn Factor no Conserved 108223318
chr16 88826892 88827420 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223319
chr16 88826951 88827446 ZNF274 GTRD no Bone Marrow (K562) 21736886
chr16 88826951 88827446 ZNF274 GTRD no Bone Marrow (K562) 108223320
chr16 88826952 88827482 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21736887
chr16 88826952 88827482 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108223321
chr16 88826980 88827496 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21736888
chr16 88826980 88827496 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108223322
chr16 88827005 88827481 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21736889
chr16 88827005 88827481 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108223323
chr16 88827036 88827506 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736890
chr16 88827036 88827506 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223324
chr16 88827159 88827172 NFKB1 JASPAR yes 12300845
chr16 88827159 88827172 NFKB1 JASPAR yes 49418380
Genes associated with rs28494875[chr16:88827172], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More