EnhancerDB
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  3. rs3820642[chr1:226879056]
Enhancers that have rs3820642[chr1:226879056]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 226878935 226879345 vista5380
VISTA
Transcript factors that have rs3820642[chr1:226879056]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226878969 226879405 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387212
chr1 226878969 226879405 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107876246
chr1 226879050 226879060 SREBF1 JASPAR yes 35833622
chr1 226879050 226879060 SREBF2 JASPAR yes 35833623
chr1 226879050 226879060 SREBF1 JASPAR yes 118472409
chr1 226879050 226879060 SREBF2 JASPAR yes 118472410
chr1 226879053 226879066 TFAP2B JASPAR yes 35833624
chr1 226879053 226879066 TFAP2B JASPAR yes 118472411
Genes associated with rs3820642[chr1:226879056], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More