EnhancerDB
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  3. rs4489598[chr1:117422458]
Enhancers that have rs4489598[chr1:117422458]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117411045 117431652 enh12190
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Brain (SK-N-SH) Thyroid Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung
chr1 117422443 117422644 vista3088
VISTA
Transcript factors that have rs4489598[chr1:117422458]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334054
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825120
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825121
chr1 117422189 117422761 ZNF143 GTRD no Epithelial (MCF-7) 21334061
chr1 117422189 117422761 ZNF143 GTRD no Epithelial (MCF-7) 107825127
chr1 117422384 117422733 ESR1 UCSC Txn Factor no Conserved 107825128
chr1 117422455 117422460 ETS2 TRANSFAC yes 31848115
chr1 117422455 117422460 ETS2 TRANSFAC yes 118358132
Genes associated with rs4489598[chr1:117422458], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More