EnhancerDB
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  3. rs533419999[chr6:139300330]
Enhancers that have rs533419999[chr6:139300330]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 139289389 139308008 enh39561
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-SH) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Colon (HCT116) Uterus Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Heart
chr6 139300314 139300341 vista53811
VISTA
Transcript factors that have rs533419999[chr6:139300330]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 139300315 139300330 FOXP1 JASPAR yes 70449739
chr6 139300315 139300330 FOXP1 JASPAR yes 105758370
chr6 139300316 139300331 FOXP1 JASPAR yes 70449740
chr6 139300316 139300331 FOXP1 JASPAR yes 105758371
chr6 139300317 139300332 FOXP1 JASPAR yes 70449741
chr6 139300317 139300332 FOXP1 JASPAR yes 105758372
chr6 139300317 139300338 IRF1 JASPAR yes 70449742
chr6 139300317 139300338 IRF1 JASPAR yes 105758373
chr6 139300318 139300333 FOXP1 JASPAR yes 70449743
chr6 139300318 139300333 FOXP1 JASPAR yes 105758374
chr6 139300318 139300339 IRF1 JASPAR yes 70449744
chr6 139300318 139300339 IRF1 JASPAR yes 105758375
chr6 139300319 139300334 FOXP1 JASPAR yes 70449745
chr6 139300319 139300334 FOXP1 JASPAR yes 105758376
chr6 139300319 139300340 IRF1 JASPAR yes 70449746
chr6 139300319 139300340 IRF1 JASPAR yes 105758377
chr6 139300320 139300335 FOXP1 JASPAR yes 70449747
chr6 139300320 139300335 FOXP1 JASPAR yes 105758378
chr6 139300322 139300337 FOXP1 JASPAR yes 70449748
chr6 139300322 139300337 FOXP1 JASPAR yes 105758379
chr6 139300323 139300338 STAT2 JASPAR yes 70449749
chr6 139300323 139300338 STAT2 JASPAR yes 105758380
chr6 139300324 139300339 FOXP1 JASPAR yes 70449750
chr6 139300324 139300339 FOXP1 JASPAR yes 105758381
chr6 139300324 139300345 IRF1 JASPAR yes 70449751
chr6 139300324 139300345 IRF1 JASPAR yes 105758382
chr6 139300325 139300346 IRF1 JASPAR yes 70449752
chr6 139300325 139300346 IRF1 JASPAR yes 105758383
chr6 139300326 139300338 FOXC2 JASPAR yes 70449753
chr6 139300326 139300338 FOXC2 JASPAR yes 105758384
chr6 139300326 139300346 RREB1 JASPAR yes 70449754
chr6 139300326 139300346 RREB1 JASPAR yes 105758385
chr6 139300327 139300338 FOXP2 JASPAR yes 70449755
chr6 139300327 139300338 FOXP2 JASPAR yes 105758386
chr6 139300329 139300344 FOXP1 JASPAR yes 70449756
chr6 139300329 139300344 FOXP1 JASPAR yes 105758387
Genes associated with rs533419999[chr6:139300330], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More