EnhancerDB
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  3. rs540058024[chr3:188017986]
Enhancers that have rs540058024[chr3:188017986]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 187996529 188025195 enh48785
Liver Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr3 188017658 188018009 vista43550
VISTA
Transcript factors that have rs540058024[chr3:188017986]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 188017980 188017995 FOXA1 JASPAR yes 8469128
chr3 188017980 188017995 FOXA1 JASPAR yes 71103887
chr3 188017981 188017993 FOXI1 JASPAR yes 8469129
chr3 188017981 188017993 FOXI1 JASPAR yes 71103888
chr3 188017981 188017996 FOXP1 JASPAR yes 8469130
chr3 188017981 188017996 FOXP1 JASPAR yes 71103889
chr3 188017982 188017993 FOXP2 JASPAR yes 8469131
chr3 188017982 188017993 FOXP2 JASPAR yes 71103890
chr3 188017982 188017994 FOXC2 JASPAR yes 8469132
chr3 188017982 188017994 FOXC2 JASPAR yes 71103891
chr3 188017982 188017996 FOXF2 JASPAR yes 8469133
chr3 188017982 188017996 FOXF2 JASPAR yes 71103892
chr3 188017983 188017991 FOXG1 JASPAR yes 8469134
chr3 188017983 188017991 FOXG1 JASPAR yes 71103893
chr3 188017984 188017995 FOXA1 JASPAR yes 8469135
chr3 188017984 188017995 FOXA1 JASPAR yes 71103894
chr3 188017986 188017998 FOXC2 JASPAR yes 8469136
chr3 188017986 188017998 FOXC2 JASPAR yes 71103895
Genes associated with rs540058024[chr3:188017986], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More