EnhancerDB
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  3. rs540268063[chr1:19278705]
Enhancers that have rs540268063[chr1:19278705]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19278388 19278892 vista599
VISTA
Transcript factors that have rs540268063[chr1:19278705]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19277822 19279058 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107802290
chr1 19278692 19278707 FOXA1 JASPAR yes 27165464
chr1 19278692 19278707 FOXA1 JASPAR yes 118242802
chr1 19278693 19278705 FOXI1 JASPAR yes 27165465
chr1 19278693 19278705 FOXI1 JASPAR yes 118242803
chr1 19278696 19278707 FOXA1 JASPAR yes 27165466
chr1 19278696 19278707 FOXA1 JASPAR yes 118242804
chr1 19278696 19278717 IRF1 JASPAR yes 27165467
chr1 19278696 19278717 IRF1 JASPAR yes 118242805
chr1 19278697 19278712 RUNX2 JASPAR yes 27165468
chr1 19278697 19278712 RUNX2 JASPAR yes 118242806
chr1 19278698 19278713 STAT2 JASPAR yes 27165469
chr1 19278698 19278713 STAT2 JASPAR yes 118242807
chr1 19278699 19278713 STAT1 JASPAR yes 27165470
chr1 19278699 19278713 STAT1 JASPAR yes 118242808
chr1 19278700 19278712 IRF1 JASPAR yes 27165471
chr1 19278700 19278712 IRF1 JASPAR yes 118242809
chr1 19278700 19278714 IRF7 JASPAR yes 27165472
chr1 19278700 19278714 IRF7 JASPAR yes 118242810
chr1 19278700 19278715 IRF9 JASPAR yes 27165473
chr1 19278700 19278715 IRF9 JASPAR yes 118242811
Genes associated with rs540268063[chr1:19278705], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More