EnhancerDB
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  3. rs540607203[chr12:125231996]
Enhancers that have rs540607203[chr12:125231996]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 125231951 125232267 vista15335
VISTA
Transcript factors that have rs540607203[chr12:125231996]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125231853 125232429 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21582710
chr12 125231853 125232429 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108069838
chr12 125231910 125232306 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582711
chr12 125231910 125232306 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069839
chr12 125231914 125232264 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21582712
chr12 125231914 125232264 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108069840
chr12 125231924 125232408 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21582713
chr12 125231924 125232408 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108069841
chr12 125231969 125232369 FOS UCSC Txn Factor no Conserved 108069842
chr12 125231979 125232319 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582714
chr12 125231979 125232319 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069843
chr12 125231983 125231997 SPI1 JASPAR yes 82498027
chr12 125231983 125231997 SPIC JASPAR yes 82498028
chr12 125231983 125231997 SPI1 JASPAR yes 124417078
chr12 125231983 125231997 SPIC JASPAR yes 124417079
chr12 125231988 125232272 ESR1 UCSC Txn Factor no Conserved 108069844
chr12 125231994 125232314 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582715
chr12 125231994 125232314 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069845
chr12 125231996 125232326 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582716
chr12 125231996 125232326 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069846
Genes associated with rs540607203[chr12:125231996], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More