EnhancerDB
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  3. rs542024625[chr19:10987404]
Enhancers that have rs542024625[chr19:10987404]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10983285 11012541 enh5003
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr19 10987245 10987998 vista28609
VISTA
Transcript factors that have rs542024625[chr19:10987404]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10987199 10987563 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849099
chr19 10987199 10987563 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384169
chr19 10987263 10988135 TCF7L2 GTRD no Colon (HCT116) 21849100
chr19 10987263 10988135 TCF7L2 GTRD no Colon (HCT116) 108384170
chr19 10987263 10988135 TCF7L2 GTRD no Colon (HCT116) 108384171
chr19 10987275 10987791 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849101
chr19 10987275 10987791 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384172
chr19 10987333 10988198 ZNF143 GTRD no Epithelial (MCF-7) 21849102
chr19 10987333 10988198 ZNF143 GTRD no Epithelial (MCF-7) 108384173
chr19 10987333 10988198 ZNF143 GTRD no Epithelial (MCF-7) 108384174
chr19 10987347 10987659 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849103
chr19 10987347 10987659 SPI1 UCSC Txn Factor no Conserved 108384175
chr19 10987347 10987659 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384176
chr19 10987347 10987757 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849104
chr19 10987347 10987757 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384177
chr19 10987349 10987920 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849105
chr19 10987349 10987920 NFIC UCSC Txn Factor no Conserved 108384178
chr19 10987349 10987920 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384179
chr19 10987365 10987721 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849106
chr19 10987365 10987721 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384180
chr19 10987370 10987806 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849107
chr19 10987370 10987806 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384181
chr19 10987380 10987690 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849108
chr19 10987380 10987690 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384182
chr19 10987381 10987701 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849109
chr19 10987381 10987701 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384183
chr19 10987383 10987612 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849110
chr19 10987383 10987612 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384184
chr19 10987385 10987910 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849111
chr19 10987385 10987910 RUNX3 UCSC Txn Factor no Conserved 108384185
chr19 10987385 10987910 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384186
chr19 10987388 10987632 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21849112
chr19 10987388 10987632 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108384187
chr19 10987389 10987699 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849113
chr19 10987389 10987699 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384188
chr19 10987391 10988064 TCF7L2 GTRD no Colon (HCT116) 21849114
chr19 10987391 10988064 TCF7L2 GTRD no Colon (HCT116) 108384189
chr19 10987391 10988064 TCF7L2 GTRD no Colon (HCT116) 108384190
chr19 10987392 10987405 ELF1 JASPAR yes 70803350
chr19 10987392 10987405 ELF1 JASPAR yes 112441786
chr19 10987394 10987604 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849115
chr19 10987394 10987604 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384191
chr19 10987401 10987679 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21849116
chr19 10987401 10987679 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108384192
Genes associated with rs542024625[chr19:10987404], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More