EnhancerDB
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  3. rs542543535[chr6:11374849]
Enhancers that have rs542543535[chr6:11374849]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 11352354 11376815 enh23022
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Large Intestine Esophagus Astrocyte Blood (GM12878) Stomach Placenta Thyroid Uterus Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Neural Stem Cells (H9) Blood (T-cell) Heart
chr6 11374452 11374883 vista50818
VISTA
Transcript factors that have rs542543535[chr6:11374849]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 11374501 11375213 NFIC UCSC Txn Factor no Conserved 108538388
chr6 11374501 11375213 NFIC UCSC Txn Factor no Conserved 108538389
chr6 11374515 11374930 RELA UCSC Txn Factor no Conserved 108538390
chr6 11374538 11375248 NFATC1 UCSC Txn Factor no Conserved 108538391
chr6 11374538 11375248 NFATC1 UCSC Txn Factor no Conserved 108538392
chr6 11374551 11374889 ATF2 UCSC Txn Factor no Conserved 108538393
chr6 11374559 11375182 FOXM1 UCSC Txn Factor no Conserved 108538394
chr6 11374559 11375182 FOXM1 UCSC Txn Factor no Conserved 108538395
chr6 11374565 11374885 RUNX3 UCSC Txn Factor no Conserved 108538396
chr6 11374574 11374852 SPI1 UCSC Txn Factor no Conserved 108538397
chr6 11374846 11374858 BHLHE23 JASPAR yes 70309023
chr6 11374846 11374858 BHLHE23 JASPAR yes 99881330
chr6 11374847 11374857 BHLHE22 JASPAR yes 70309024
chr6 11374847 11374857 BHLHE22 JASPAR yes 99881331
Genes associated with rs542543535[chr6:11374849], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More