EnhancerDB
  1. Home
  2. SNP
  3. rs546423807[chr1:171398331]
Enhancers that have rs546423807[chr1:171398331]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs546423807[chr1:171398331]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171397850 171398489 SOX2 GTRD no Neural Stem Cells (H9) 21349642
chr1 171397850 171398489 SOX2 GTRD no Neural Stem Cells (H9) 107845396
chr1 171397915 171398345 SOX2 GTRD no Neural Stem Cells (H9) 21349644
chr1 171398199 171398476 ZNF274 GTRD no Bone Marrow (K562) 107845397
chr1 171398283 171398559 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107845398
Genes associated with rs546423807[chr1:171398331], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More