EnhancerDB
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  3. rs550700853[chr1:171399476]
Enhancers that have rs550700853[chr1:171399476]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs550700853[chr1:171399476]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171399389 171399813 SOX2 GTRD no Neural Stem Cells (H9) 21349646
chr1 171399464 171399476 PBX1 JASPAR yes 33079779
chr1 171399471 171399482 NFE2 JASPAR yes 33079780
chr1 171399472 171399481 JDP2 JASPAR yes 33079781
Genes associated with rs550700853[chr1:171399476], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More