EnhancerDB
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  3. rs553404113[chr1:27869543]
Enhancers that have rs553404113[chr1:27869543]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27859909 27873735 enh11667
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Heart
chr1 27869425 27869556 vista921
VISTA
Transcript factors that have rs553404113[chr1:27869543]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27866892 27870463 ZNF274 GTRD no Bone Marrow (K562) 107802587
chr1 27869537 27869552 HNF4A JASPAR yes 27707382
chr1 27869537 27869552 HNF4A JASPAR yes 118258195
chr1 27869541 27869547 SOX10 JASPAR yes 27707383
chr1 27869541 27869547 SOX10 JASPAR yes 118258196
Genes associated with rs553404113[chr1:27869543], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More