EnhancerDB
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  3. rs562472974[chr18:55880992]
Enhancers that have rs562472974[chr18:55880992]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55867165 55894619 enh32734
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Heart
chr18 55880754 55881007 vista27581
VISTA
Transcript factors that have rs562472974[chr18:55880992]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55880796 55881025 RUNX3 UCSC Txn Factor no Conserved 108338144
chr18 55880796 55881025 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338145
chr18 55880974 55880994 RREB1 JASPAR yes 42714154
chr18 55880974 55880994 RREB1 JASPAR yes 110927578
chr18 55880977 55880997 RREB1 JASPAR yes 42714156
chr18 55880977 55880997 RREB1 JASPAR yes 110927580
chr18 55880983 55881004 IRF1 JASPAR yes 42714157
chr18 55880983 55881004 IRF1 JASPAR yes 110927581
chr18 55880984 55880999 FOXP1 JASPAR yes 42714158
chr18 55880984 55880999 FOXP1 JASPAR yes 110927582
Genes associated with rs562472974[chr18:55880992], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More