EnhancerDB
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  3. rs574041675[chr1:90376736]
Enhancers that have rs574041675[chr1:90376736]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 90347765 90388035 enh484
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 90376424 90376756 vista2408
VISTA
Transcript factors that have rs574041675[chr1:90376736]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 90376103 90376739 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107813874
chr1 90376277 90376753 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813877
chr1 90376277 90376927 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813878
chr1 90376299 90376875 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813879
chr1 90376345 90376829 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813880
chr1 90376358 90376846 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813881
chr1 90376358 90377037 EP300 UCSC Txn Factor no Conserved 107813882
chr1 90376358 90377037 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813883
chr1 90376393 90376777 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813886
chr1 90376399 90376739 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813887
chr1 90376412 90376742 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813888
chr1 90376418 90376748 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813889
chr1 90376419 90376739 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813890
chr1 90376431 90376804 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813891
chr1 90376431 90377105 TCF12 UCSC Txn Factor no Conserved 107813892
chr1 90376460 90376936 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813893
chr1 90376472 90376736 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813895
chr1 90376509 90376753 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107813898
chr1 90376515 90376745 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813899
chr1 90376529 90377105 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813900
chr1 90376530 90377180 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813901
chr1 90376730 90376751 IRF1 JASPAR yes 30633528
chr1 90376730 90376751 IRF1 JASPAR yes 118326495
chr1 90376732 90376747 STAT2 JASPAR yes 30633529
chr1 90376732 90376747 STAT2 JASPAR yes 118326496
chr1 90376735 90376750 FOXP1 JASPAR yes 30633530
chr1 90376735 90376750 FOXP1 JASPAR yes 118326497
chr1 90376736 90376751 FOXP1 JASPAR yes 30633531
chr1 90376736 90376751 FOXP1 JASPAR yes 118326498
Genes associated with rs574041675[chr1:90376736], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More