EnhancerDB
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  3. rs62408728[chr6:30788195]
Enhancers that have rs62408728[chr6:30788195]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 30740965 30818275 enh23149
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr6 30787859 30788252 vista51550
VISTA
Transcript factors that have rs62408728[chr6:30788195]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 30787766 30788518 POLR2A UCSC Txn Factor no Conserved 108539554
chr6 30788089 30788341 RAD21 UCSC Txn Factor no Conserved 108539555
chr6 30788187 30788200 SMAD2 JASPAR yes 70345038
chr6 30788187 30788200 SMAD2 JASPAR yes 101054793
chr6 30788192 30788213 IRF1 JASPAR yes 70345039
chr6 30788192 30788213 IRF1 JASPAR yes 101054794
Genes associated with rs62408728[chr6:30788195], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More