EnhancerDB
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  3. rs6658230[chr1:234658824]
Enhancers that have rs6658230[chr1:234658824]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234649189 234693444 enh991
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 234658291 234658851 vista5603
VISTA
Transcript factors that have rs6658230[chr1:234658824]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234654963 234658926 ZNF274 GTRD no Cervix (HeLa-S3) 21393770
chr1 234654963 234658926 ZNF274 GTRD no Cervix (HeLa-S3) 107880090
chr1 234656231 234660423 ZNF274 GTRD no Cervix (HeLa-S3) 21393809
chr1 234656231 234660423 ZNF274 GTRD no Cervix (HeLa-S3) 107880091
chr1 234656231 234660423 ZNF274 GTRD no Cervix (HeLa-S3) 107880092
chr1 234656259 234658871 ZNF274 GTRD no Cervix (HeLa-S3) 21393810
chr1 234656259 234658871 ZNF274 GTRD no Cervix (HeLa-S3) 107880093
chr1 234656314 234660388 ZBTB33 GTRD no Lung (A549) 107880094
chr1 234656314 234660388 ZBTB33 GTRD no Lung (A549) 107880095
chr1 234656376 234658832 ZNF274 GTRD no Cervix (HeLa-S3) 21393812
chr1 234656376 234658832 ZNF274 GTRD no Cervix (HeLa-S3) 107880096
chr1 234656490 234659059 P63 GTRD no Skin (Keratinocyte) 21393813
chr1 234656490 234659059 P63 GTRD no Skin (Keratinocyte) 107880097
chr1 234656518 234661086 ZBTB33 GTRD no Lung (A549) 107880098
chr1 234656518 234661086 ZBTB33 GTRD no Lung (A549) 107880099
chr1 234656535 234658904 P63 GTRD no Skin (Keratinocyte) 21393814
chr1 234656535 234658904 P63 GTRD no Skin (Keratinocyte) 107880100
chr1 234656595 234658827 ZNF274 GTRD no Cervix (HeLa-S3) 21393817
chr1 234656595 234658827 ZNF274 GTRD no Cervix (HeLa-S3) 107880101
chr1 234656621 234660270 ZBTB33 GTRD no Lung (A549) 107880102
chr1 234656621 234660270 ZBTB33 GTRD no Lung (A549) 107880103
chr1 234656629 234659177 ZNF143 GTRD no Epithelial (MCF-7) 21393820
chr1 234656629 234659177 ZNF143 GTRD no Epithelial (MCF-7) 107880104
chr1 234656654 234658836 ZBTB33 GTRD no Lung (A549) 107880105
chr1 234656751 234659028 P63 GTRD no Skin (Keratinocyte) 21393829
chr1 234656751 234659028 P63 GTRD no Skin (Keratinocyte) 107880108
chr1 234656751 234660437 TCF7L2 GTRD no Colon (HCT116) 21393830
chr1 234656751 234660437 TCF7L2 GTRD no Colon (HCT116) 107880109
chr1 234656751 234660437 TCF7L2 GTRD no Colon (HCT116) 107880110
chr1 234656793 234658965 P63 GTRD no Skin (Keratinocyte) 21393839
chr1 234656793 234658965 P63 GTRD no Skin (Keratinocyte) 107880111
chr1 234656935 234660008 ZBTB33 GTRD no Lung (A549) 107880115
chr1 234656935 234660008 ZBTB33 GTRD no Lung (A549) 107880116
chr1 234656967 234660453 ZBTB33 GTRD no Lung (A549) 107880117
chr1 234656967 234660453 ZBTB33 GTRD no Lung (A549) 107880118
chr1 234657616 234659135 TEF1 GTRD no Bone (Osteoblast) 21393904
chr1 234657616 234659135 TEF1 GTRD no Bone (Osteoblast) 107880119
chr1 234657913 234658913 ZNF143 GTRD no Epithelial (MCF-7) 21393912
chr1 234657913 234658913 ZNF143 GTRD no Epithelial (MCF-7) 107880127
chr1 234657930 234658896 ZNF143 GTRD no Epithelial (MCF-7) 21393913
chr1 234657930 234658896 ZNF143 GTRD no Epithelial (MCF-7) 107880128
chr1 234657954 234659132 ZNF274 GTRD no Liver (HepG2) 21393915
chr1 234657954 234659132 ZNF274 GTRD no Liver (HepG2) 107880130
chr1 234657963 234660479 ZNF274 GTRD no Liver (HepG2) 21393916
chr1 234657963 234660479 ZNF274 GTRD no Liver (HepG2) 107880131
chr1 234657963 234660479 ZNF274 GTRD no Liver (HepG2) 107880132
chr1 234658050 234658893 ZNF143 GTRD no Epithelial (MCF-7) 21393924
chr1 234658050 234658893 ZNF143 GTRD no Epithelial (MCF-7) 107880141
chr1 234658185 234658845 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107880159
chr1 234658451 234658887 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107880172
chr1 234658542 234659090 ZNF274 GTRD no Liver (HepG2) 21393941
chr1 234658542 234659090 ZNF274 GTRD no Liver (HepG2) 107880174
chr1 234658551 234659112 ZNF274 GTRD no Liver (HepG2) 21393942
chr1 234658551 234659112 ZNF274 GTRD no Liver (HepG2) 107880175
chr1 234658628 234658958 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107880176
chr1 234658630 234658894 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107880177
chr1 234658631 234659204 ZNF274 GTRD no Liver (HepG2) 21393943
chr1 234658631 234659204 ZNF274 GTRD no Liver (HepG2) 107880178
chr1 234658662 234659149 ZNF274 GTRD no Liver (HepG2) 21393944
chr1 234658662 234659149 ZNF274 GTRD no Liver (HepG2) 107880179
chr1 234658707 234658844 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107880180
chr1 234658759 234659375 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21393945
chr1 234658759 234659375 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107880181
chr1 234658759 234659375 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107880182
chr1 234658808 234658829 ZNF263 JASPAR yes 36283180
chr1 234658808 234658829 ZNF263 JASPAR yes 118482875
chr1 234658817 234658835 RARA JASPAR yes 36283183
chr1 234658817 234658835 RARA JASPAR yes 118482878
Genes associated with rs6658230[chr1:234658824], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More