EnhancerDB
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  3. rs6688259[chr1:229357533]
Enhancers that have rs6688259[chr1:229357533]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
chr1 229357329 229357959 vista5462
VISTA
Transcript factors that have rs6688259[chr1:229357533]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229356858 229357703 TCF7L2 UCSC Txn Factor no Conserved 107877940
chr1 229356868 229357652 TCF12 UCSC Txn Factor no Conserved 107877942
chr1 229356903 229357563 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390762
chr1 229356903 229357563 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877945
chr1 229356925 229357712 EP300 UCSC Txn Factor no Conserved 107877946
chr1 229357030 229357686 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390786
chr1 229357030 229357686 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107877950
chr1 229357042 229357582 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877951
chr1 229357088 229357652 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390790
chr1 229357088 229357652 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877954
chr1 229357091 229357595 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390791
chr1 229357091 229357595 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877955
chr1 229357106 229357682 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877956
chr1 229357107 229357703 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21390793
chr1 229357107 229357703 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107877957
chr1 229357131 229357635 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877959
chr1 229357132 229357748 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390795
chr1 229357132 229357748 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877960
chr1 229357137 229357633 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390796
chr1 229357137 229357633 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107877961
chr1 229357143 229357799 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877962
chr1 229357151 229357635 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877963
chr1 229357172 229357742 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390797
chr1 229357172 229357742 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107877964
chr1 229357197 229357637 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390798
chr1 229357197 229357637 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877965
chr1 229357236 229357652 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877966
chr1 229357239 229357653 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390799
chr1 229357239 229357653 NFIC UCSC Txn Factor no Conserved 107877967
chr1 229357239 229357653 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877968
chr1 229357257 229357713 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390800
chr1 229357257 229357713 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877969
chr1 229357261 229357654 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390801
chr1 229357261 229357654 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877970
chr1 229357261 229357668 FOXA1 UCSC Txn Factor no Conserved 107877971
chr1 229357263 229357578 TFAP2C UCSC Txn Factor no Conserved 107877973
chr1 229357269 229357578 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390803
chr1 229357269 229357578 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877974
chr1 229357274 229357674 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390804
chr1 229357274 229357674 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877975
chr1 229357283 229357629 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390805
chr1 229357283 229357629 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877976
chr1 229357302 229357642 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390806
chr1 229357302 229357642 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877977
chr1 229357305 229357869 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390807
chr1 229357305 229357869 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877978
chr1 229357316 229357547 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390808
chr1 229357316 229357547 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877979
chr1 229357320 229357700 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390809
chr1 229357320 229357700 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877980
chr1 229357359 229357643 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877981
chr1 229357382 229357712 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390810
chr1 229357382 229357712 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877982
chr1 229357400 229357700 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390811
chr1 229357400 229357700 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877983
chr1 229357457 229357717 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390812
chr1 229357457 229357717 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877984
chr1 229357532 229357547 FOXA1 JASPAR yes 35976264
chr1 229357532 229357547 FOXA1 JASPAR yes 118476021
Genes associated with rs6688259[chr1:229357533], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More