EnhancerDB
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  3. rs78052138[chr16:85239626]
Enhancers that have rs78052138[chr16:85239626]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs78052138[chr16:85239626]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85231788 85239840 TCF7L2 GTRD no Colon (HCT116) 21720868
chr16 85237690 85239823 TCF7L2 GTRD no Colon (HCT116) 21721104
chr16 85237856 85239829 ZNF143 GTRD no Epithelial (MCF-7) 21721108
chr16 85239008 85239960 TCF7L2 GTRD no Colon (HCT116) 21721130
chr16 85239061 85239808 TCF7L2 GTRD no Colon (HCT116) 21721131
chr16 85239228 85239684 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21721135
chr16 85239268 85239668 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21721136
chr16 85239278 85240667 ZNF274 GTRD no Blood (GM12878) 21721137
chr16 85239377 85239687 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721141
chr16 85239390 85239654 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21721142
chr16 85239400 85239652 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721143
chr16 85239422 85239986 ZNF274 GTRD no Bone Marrow (K562) 21721147
chr16 85239613 85239633 ESR1 JASPAR yes 12032512
chr16 85239616 85239634 ESR2 JASPAR yes 12032513
chr16 85239617 85239634 ESR1 JASPAR yes 12032514
chr16 85239618 85239632 TLX1 JASPAR yes 12032515
chr16 85239618 85239633 ESR2 JASPAR yes 12032516
Genes associated with rs78052138[chr16:85239626], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More