EnhancerDB
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Enhancers that have rs78409559[chr1:229366557]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
chr1 229366402 229366798 vista5464
VISTA
Transcript factors that have rs78409559[chr1:229366557]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229366131 229366707 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878012
chr1 229366201 229366797 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107878013
chr1 229366209 229366749 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878014
chr1 229366273 229366629 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390856
chr1 229366273 229366629 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878015
chr1 229366319 229366649 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390857
chr1 229366319 229366649 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878017
chr1 229366320 229366640 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107878018
chr1 229366329 229366669 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390858
chr1 229366329 229366669 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878019
chr1 229366361 229366641 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390859
chr1 229366361 229366641 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107878020
chr1 229366368 229366678 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107878021
chr1 229366371 229366867 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390860
chr1 229366371 229366867 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107878022
chr1 229366377 229366653 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390861
chr1 229366377 229366653 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107878023
chr1 229366382 229366646 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390862
chr1 229366382 229366646 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878024
chr1 229366387 229366667 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107878025
chr1 229366401 229366575 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878026
chr1 229366402 229366662 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107878027
chr1 229366403 229366593 FOS UCSC Txn Factor no Conserved 107878028
chr1 229366408 229366578 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107878029
chr1 229366476 229366806 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107878032
chr1 229366554 229366565 NFE2L2 JASPAR yes 35977712
chr1 229366554 229366565 NFE2L2 JASPAR yes 118476204
Genes associated with rs78409559[chr1:229366557], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More