EnhancerDB
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  3. rs9659640[chr1:117421804]
Enhancers that have rs9659640[chr1:117421804]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117411045 117431652 enh12190
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Brain (SK-N-SH) Thyroid Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung
chr1 117421623 117422020 vista3087
VISTA
Transcript factors that have rs9659640[chr1:117421804]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117421267 117421937 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107825107
chr1 117421415 117422071 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334044
chr1 117421415 117422071 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107825108
chr1 117421473 117421973 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334045
chr1 117421473 117421973 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825109
chr1 117421478 117421858 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334046
chr1 117421478 117421858 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825110
chr1 117421498 117422088 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334047
chr1 117421498 117422088 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825111
chr1 117421517 117421897 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334048
chr1 117421517 117421897 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825112
chr1 117421556 117421926 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334049
chr1 117421556 117421926 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825113
chr1 117421581 117422257 KAP1 UCSC Txn Factor no Conserved 107825114
chr1 117421605 117422201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334050
chr1 117421605 117422201 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825115
chr1 117421650 117422170 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334051
chr1 117421650 117422170 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825116
chr1 117421685 117422155 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334052
chr1 117421685 117422155 GATA3 UCSC Txn Factor no Conserved 107825117
chr1 117421685 117422155 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107825118
chr1 117421708 117422144 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334053
chr1 117421708 117422144 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825119
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334054
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825120
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825121
chr1 117421758 117422128 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334055
chr1 117421758 117422128 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825122
chr1 117421784 117422148 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334056
chr1 117421784 117422148 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825123
chr1 117421796 117421805 THAP1 JASPAR yes 31848046
chr1 117421796 117421805 THAP1 JASPAR yes 118358100
chr1 117421803 117421822 REST JASPAR yes 31848047
chr1 117421803 117421822 REST JASPAR yes 118358101
Genes associated with rs9659640[chr1:117421804], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More