EnhancerDB
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Enhancers that regulate CALCOCO1[ENSG00000012822.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 54040785 54048415 enh29579 54121529 73114
Astrocyte Liver (HepG2) Large Intestine
chr12 54048865 54056820 enh14743 54121529 64709
Prostate (PC-3) Liver (HepG2) Large Intestine Lung (PC-9) Astrocyte Stomach Placenta Thyroid Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr12 54052823 54053029 vista13535 54121529 68500
VISTA
chr12 54072437 54072838 vista13536 54121529 48691
VISTA
chr12 54081405 54085555 enh75042 54121529 35974
Muscle (A673)
chr12 54088125 54092335 enh87961 54121529 29194
Pancreas Epithelial (MCF-7)
chr12 54088486 54088540 vista13537 54121529 32989
VISTA
chr12 54090300 54090537 vista13538 54121529 30992
VISTA
chr12 54090636 54091341 vista335 54121529 30188
VISTA
chr12 54093705 54097855 enh75043 54121529 23674
Muscle (A673)
chr12 54133160 54133497 vista13539 54121529 11631
VISTA
chr12 54135485 54153565 enh2372 54121529 13956
Cervix (HeLa-S3) Ovary Blood (GM12878) Muscle (A673) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Pancreas (Panc1) Uterus
chr12 54141936 54142097 vista13540 54121529 20407
VISTA
chr12 54145140 54145515 vista13541 54121529 23611
VISTA
chr12 54147716 54148178 vista13542 54121529 26187
VISTA
chr12 54149784 54149995 vista13543 54121529 28255
VISTA
chr12 54150655 54151094 vista13544 54121529 29126
VISTA
chr12 54159548 54166533 enh29580 54121529 38019
Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Astrocyte Colon (HCT116) Lung (PC-9) Pancreas (Panc1)
chr12 54167805 54178175 enh43742 54121529 46276
Prostate (PC-3) Muscle (A673) Pancreas (Panc1) Muscle (Myotube) Uterus
chr12 54186005 54202829 enh80200 54121529 64476
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Epithelial (MCF-7)
chr12 54198975 54199124 vista13545 54121529 77446
VISTA
chr12 54212382 54224675 enh43743 54121529 90853
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Epithelial (MCF-7)
Transcript facotrs that regulate CALCOCO1[ENSG00000012822.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with CALCOCO1[ENSG00000012822.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 53440674 rs10783559 C T 664229 Esophagus 0.120956 2644276
chr12 53728734 rs138065350 G T 376169 Esophagus 0.2455 2645654
chr12 53492123 rs9658602 G T 612780 Pancreas 0.392558 2644772
chr12 54993959 rs35053912 A AG 872430 Spleen 0.28581 2652907
chr12 54342822 rs1838173 T C 221293 Ovary 0.322028 2649210
chr12 53615554 rs145393179 G A 489349 Liver 0.328556 2645203
chr12 55096887 rs61956624 C T 975358 Adrenal 0.100753 2653656
Details of CALCOCO1[ENSG00000012822.11]
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Genomic Location chr12:54104903-54121529[-]
TSS 54121529
Gene Name CALCOCO1
Ensembl ID ENSG00000012822.11
ENTREZID 57658
Uniprot
A0A024RAZ1
Q9P1Z2
Protein Name
isoform CRA_b
Alternative protein CALCOCO1
Calcium binding and coiled-coil domain 1
Calcium-binding and coiled-coil domain-containing protein 1
Expression levels of CALCOCO1[ENSG00000012822.11]
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