EnhancerDB
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Enhancers that regulate TMEM38A[ENSG00000072954.2]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 16668605 16681944 enh32895 16771938 89994
Prostate (RWPE1) Astrocyte Muscle (A673) Muscle (Myotube) Epithelial (MCF-7)
chr19 16684989 16708135 enh5034 16771938 63803
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr19 16696208 16696379 vista28838 16771938 75559
VISTA
chr19 16696641 16697052 vista28839 16771938 74886
VISTA
chr19 16704980 16705245 vista28840 16771938 66693
VISTA
chr19 16706007 16706238 vista28841 16771938 65700
VISTA
chr19 16708545 16713214 enh5035 16771938 58724
Blood (OCI-LY7) Peripheral Blood (MM.1S) Brain (SK-N-SH) Blood (Karpas-422)
chr19 16713985 16733121 enh5036 16771938 38817
Liver Astrocyte Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 16745005 16750535 enh17958 16771938 21403
Muscle (A673) Placenta Brain (SK-N-MC)
chr19 16758629 16762835 enh62722 16771938 9103
Esophagus Muscle (A673)
chr19 16772555 16772747 vista28842 16771938 617
VISTA
chr19 16779311 16779659 vista28843 16771938 7373
VISTA
chr19 16780599 16784983 enh44630 16771938 8661
Muscle (Myotube)
chr19 16785925 16790535 enh110939 16771938 13987
Cervix (HeLa-S3)
chr19 16810782 16815332 enh62723 16771938 38844
Esophagus Prostate (RWPE1)
chr19 16842645 16848815 enh17959 16771938 70707
Muscle (A673) Placenta Pancreas Uterus Stomach
Transcript facotrs that regulate TMEM38A[ENSG00000072954.2]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 16770547 16772788 POLR2A UCSC Txn Factor no Conserved 16771938 850 108394102
chr19 16772168 16772572 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 16771938 230 108394103
chr19 16772368 16772684 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 430 108394104
chr19 16772372 16772808 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 434 108394105
chr19 16772382 16772686 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 444 108394106
chr19 16772386 16772716 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 448 108394107
chr19 16772392 16772688 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 454 108394108
chr19 16772397 16772707 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 459 108394109
chr19 16772403 16772723 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 465 108394110
chr19 16772432 16772756 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 16771938 494 108394111
chr19 16772460 16772840 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 522 108394112
chr19 16772469 16772568 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 531 108394113
chr19 16772478 16772750 RUNX3 UCSC Txn Factor no Conserved 16771938 540 108394114
chr19 16772478 16772750 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 540 108394115
chr19 16772492 16772598 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 16771938 554 108394116
chr19 16772512 16772788 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 16771938 574 108394117
chr19 16772579 16772583 TEAD2 TRANSFAC yes 16771938 641 70817494
chr19 16772606 16772610 ESR1 TRANSFAC yes 16771938 668 70817495
chr19 16772608 16772777 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 16771938 670 108394118
chr19 16772616 16772631 IRF9 JASPAR yes 16771938 678 70817496
chr19 16772617 16772631 IRF7 JASPAR yes 16771938 679 70817497
chr19 16772617 16772631 IRF8 JASPAR yes 16771938 679 70817498
chr19 16772618 16772632 STAT1 JASPAR yes 16771938 680 70817499
chr19 16772618 16772636 IRF2 JASPAR yes 16771938 680 70817500
chr19 16772619 16772631 IRF1 JASPAR yes 16771938 681 70817501
chr19 16772639 16772645 MZF1 JASPAR yes 16771938 701 70817502
chr19 16772659 16772680 ZNF263 JASPAR yes 16771938 721 70817503
chr19 16772663 16772684 ZNF263 JASPAR yes 16771938 725 70817504
chr19 16772664 16772685 ZNF263 JASPAR yes 16771938 726 70817505
chr19 16772670 16772676 SP1 TRANSFAC yes 16771938 732 70817506
chr19 16772675 16772685 SP1 JASPAR yes 16771938 737 70817507
chr19 16772702 16772715 TFAP2A JASPAR yes 16771938 764 70817508
chr19 16772702 16772715 TFAP2B JASPAR yes 16771938 764 70817509
chr19 16772702 16772715 TFAP2C JASPAR yes 16771938 764 70817510
chr19 16772703 16772717 EBF1 JASPAR yes 16771938 765 70817511
SNPs associated with TMEM38A[ENSG00000072954.2], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
Details of TMEM38A[ENSG00000072954.2]
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Genomic Location chr19:16771938-16800840[+]
TSS 16771938
Gene Name TMEM38A
Ensembl ID ENSG00000072954.2
ENTREZID 79041
Uniprot
Q9H6F2
Protein Name
Trimeric intracellular cation channel type A
Expression levels of TMEM38A[ENSG00000072954.2]
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