EnhancerDB
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Enhancers that regulate COL16A1[ENSG00000084636.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 32069416 32073762 enh26611 32169920 96158
Astrocyte Peripheral Blood (MM.1S) Bone (Osteoblast)
chr1 32101267 32108955 enh11718 32169920 60965
Skin (Keratinocyte) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Lung (PC-9) Neural Stem Cells (H9) Stomach
chr1 32108020 32108204 vista1083 32169920 61716
VISTA
chr1 32132085 32137495 enh109303 32169920 32425
Stomach
chr1 32166698 32166999 vista1084 32169920 2921
VISTA
chr1 32170830 32171205 vista1085 32169920 910
VISTA
chr1 32174610 32186592 enh11719 32169920 4690
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Placenta Muscle (Myoblast) Pancreas Muscle (Myotube) Uterus Thymus Heart
chr1 32180603 32180986 vista1086 32169920 10683
VISTA
chr1 32187327 32191869 enh89475 32169920 17407
Prostate (RWPE1)
chr1 32208225 32220903 enh200 32169920 38305
Large Intestine Bone (Osteoblast) Blood (OCI-LY7) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Muscle (Myotube) Blood (T-cell) Heart
chr1 32224585 32228735 enh11720 32169920 54665
Placenta
chr1 32227408 32227911 vista1087 32169920 57488
VISTA
chr1 32235645 32243035 enh11721 32169920 65725
Placenta Thymus
chr1 32237691 32238692 vista1088 32169920 67771
VISTA
chr1 32244783 32255875 enh201 32169920 74863
Bone Marrow (K562) Brain (SK-N-SH) Blood (OCI-LY7) Blood (Karpas-422) Pancreas (Panc1) Uterus
chr1 32250836 32250955 vista1089 32169920 80916
VISTA
chr1 32253647 32254040 vista1090 32169920 83727
VISTA
chr1 32263216 32263220 vista1091 32169920 93296
VISTA
Transcript facotrs that regulate COL16A1[ENSG00000084636.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 32166450 32167100 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 32169920 2820 107802739
chr1 32166698 32166708 SMAD3 JASPAR yes 32169920 3212 118266993
chr1 32166717 32166722 ETS2 TRANSFAC yes 32169920 3198 118266994
chr1 32166727 32166732 SP1 TRANSFAC yes 32169920 3188 118266995
chr1 32166729 32166744 TFAP2A JASPAR yes 32169920 3176 118266996
chr1 32166729 32166744 TFAP2C JASPAR yes 32169920 3176 118266997
chr1 32166730 32166739 TFAP2A JASPAR yes 32169920 3181 118266998
chr1 32166730 32166741 EBF1 JASPAR yes 32169920 3179 118266999
chr1 32166731 32166740 TFAP2A JASPAR yes 32169920 3180 118267000
chr1 32166735 32166740 SP1 TRANSFAC yes 32169920 3180 118267001
chr1 32166736 32166750 TLX1 JASPAR yes 32169920 3170 118267002
chr1 32166736 32166756 ESR1 JASPAR yes 32169920 3164 118267003
chr1 32166739 32166757 ESR1 JASPAR yes 32169920 3163 118267004
chr1 32166742 32166751 NFIX JASPAR yes 32169920 3169 118267005
chr1 32166744 32166750 NFIC JASPAR yes 32169920 3170 118267006
chr1 32166746 32166750 H1TF2 TRANSFAC yes 32169920 3170 118267007
chr1 32166746 32166750 NFE TRANSFAC yes 32169920 3170 118267008
chr1 32166746 32166750 SRF TRANSFAC yes 32169920 3170 118267009
chr1 32166759 32166776 RXRA JASPAR yes 32169920 3144 118267010
chr1 32166760 32166775 PRDM1 JASPAR yes 32169920 3145 118267011
chr1 32166763 32166774 E2F6 JASPAR yes 32169920 3146 118267012
chr1 32166766 32166776 SP1 JASPAR yes 32169920 3144 118267013
chr1 32166782 32166786 ESR1 TRANSFAC yes 32169920 3134 118267014
chr1 32166799 32166803 NFE TRANSFAC yes 32169920 3117 118267015
chr1 32166812 32166831 PAX5 JASPAR yes 32169920 3089 118267016
chr1 32166821 32166835 JUN JASPAR yes 32169920 3085 118267017
chr1 32166821 32166841 PPARG JASPAR yes 32169920 3079 118267018
chr1 32166824 32166835 FOSL2 JASPAR yes 32169920 3085 118267019
chr1 32166824 32166835 JUNB JASPAR yes 32169920 3085 118267020
chr1 32166825 32166836 FOS JASPAR yes 32169920 3084 118267021
chr1 32166825 32166836 FOSL1 JASPAR yes 32169920 3084 118267022
chr1 32166825 32166836 JUND JASPAR yes 32169920 3084 118267023
chr1 32166825 32166836 NFE2 JASPAR yes 32169920 3084 118267024
chr1 32166826 32166833 JUN TRANSFAC yes 32169920 3087 118267025
chr1 32166826 32166835 JDP2 JASPAR yes 32169920 3085 118267026
chr1 32166826 32166837 FOSL2 JASPAR yes 32169920 3083 118267027
chr1 32166826 32166837 JUNB JASPAR yes 32169920 3083 118267028
chr1 32166826 32166840 JUN JASPAR yes 32169920 3080 118267029
chr1 32166837 32166846 NFIX JASPAR yes 32169920 3074 118267030
chr1 32166838 32166844 NFIC JASPAR yes 32169920 3076 118267031
chr1 32166838 32166852 TLX1 JASPAR yes 32169920 3068 118267032
chr1 32166839 32166853 TLX1 JASPAR yes 32169920 3067 118267033
chr1 32166855 32166860 ETS2 TRANSFAC yes 32169920 3060 118267034
chr1 32166858 32166871 ZBTB18 JASPAR yes 32169920 3049 118267035
chr1 32166860 32166872 TAL1 JASPAR yes 32169920 3048 118267036
chr1 32166864 32166875 CEBPA JASPAR yes 32169920 3045 118267037
chr1 32166878 32166884 NFE2 TRANSFAC yes 32169920 3036 118267038
chr1 32166881 32166891 SP1 JASPAR yes 32169920 3029 118267039
chr1 32166882 32166892 SP1 JASPAR yes 32169920 3028 118267040
chr1 32166885 32166900 TFAP2A JASPAR yes 32169920 3020 118267041
chr1 32166885 32166900 TFAP2C JASPAR yes 32169920 3020 118267042
chr1 32166886 32166896 ZNF740 JASPAR yes 32169920 3024 118267043
chr1 32166887 32166900 TFAP2A JASPAR yes 32169920 3020 118267044
chr1 32166887 32166900 TFAP2B JASPAR yes 32169920 3020 118267045
chr1 32166887 32166900 TFAP2C JASPAR yes 32169920 3020 118267046
chr1 32166888 32166899 EBF1 JASPAR yes 32169920 3021 118267047
chr1 32166888 32166900 TFAP2A JASPAR yes 32169920 3020 118267048
chr1 32166888 32166900 TFAP2B JASPAR yes 32169920 3020 118267049
chr1 32166888 32166900 TFAP2C JASPAR yes 32169920 3020 118267050
chr1 32166888 32166902 EBF1 JASPAR yes 32169920 3018 118267051
chr1 32166890 32166901 EBF1 JASPAR yes 32169920 3019 118267052
chr1 32166914 32166929 HNF4G JASPAR yes 32169920 2991 118267053
chr1 32166915 32166930 HNF4A JASPAR yes 32169920 2990 118267054
chr1 32166927 32166947 RREB1 JASPAR yes 32169920 2973 118267055
chr1 32166944 32166950 HiNF-A TRANSFAC yes 32169920 2970 118267056
chr1 32166967 32166971 LFA1 TRANSFAC yes 32169920 2949 118267057
chr1 32166971 32166976 SP1 TRANSFAC yes 32169920 2944 118267058
chr1 32166973 32166985 GLI2 JASPAR yes 32169920 2935 118267059
chr1 32166991 32166995 H4TF2 TRANSFAC yes 32169920 2925 118267060
chr1 32170568 32171193 TCF7L2 GTRD no Colon (HCT116) 32169920 648 107802740
chr1 32170865 32170868 MYB TRANSFAC yes 32169920 945 118267061
chr1 32170872 32170884 INSM1 JASPAR yes 32169920 952 118267062
chr1 32170874 32170884 MZF1 JASPAR yes 32169920 954 118267063
chr1 32170889 32170909 TP53 JASPAR yes 32169920 969 118267064
chr1 32170891 32170895 LFA1 TRANSFAC yes 32169920 971 118267065
chr1 32170899 32170912 NFKB1 JASPAR yes 32169920 979 118267066
chr1 32170900 32170910 RELA JASPAR yes 32169920 980 118267067
chr1 32170900 32170910 REL JASPAR yes 32169920 980 118267068
chr1 32170900 32170911 NFKB1 JASPAR yes 32169920 980 118267069
chr1 32170901 32170911 NFKB1 JASPAR yes 32169920 981 118267070
chr1 32170901 32170911 RELA JASPAR yes 32169920 981 118267071
chr1 32170901 32170912 NFKB1 JASPAR yes 32169920 981 118267072
chr1 32170903 32170908 H4TF1 TRANSFAC yes 32169920 983 118267073
chr1 32170904 32170912 FEV JASPAR yes 32169920 984 118267074
chr1 32170904 32170915 E2F4 JASPAR yes 32169920 984 118267075
chr1 32170904 32170915 E2F6 JASPAR yes 32169920 984 118267076
chr1 32170904 32170918 E2F7 JASPAR yes 32169920 984 118267077
chr1 32170905 32170912 E2F1 TRANSFAC yes 32169920 985 118267078
chr1 32170905 32170913 E2F1 JASPAR yes 32169920 985 118267079
chr1 32170905 32170916 E2F1 JASPAR yes 32169920 985 118267080
chr1 32170924 32170945 MAFG JASPAR yes 32169920 1004 118267081
chr1 32170925 32170939 JUN JASPAR yes 32169920 1005 118267082
chr1 32170928 32170939 JUNB JASPAR yes 32169920 1008 118267083
chr1 32170928 32170939 NFE2L2 JASPAR yes 32169920 1008 118267084
chr1 32170929 32170940 FOS JASPAR yes 32169920 1009 118267085
chr1 32170929 32170940 FOSL1 JASPAR yes 32169920 1009 118267086
chr1 32170929 32170940 JUND JASPAR yes 32169920 1009 118267087
chr1 32170929 32170947 MAFF JASPAR yes 32169920 1009 118267088
chr1 32170930 32170941 FOSL2 JASPAR yes 32169920 1010 118267089
chr1 32170930 32170941 JUNB JASPAR yes 32169920 1010 118267090
chr1 32170931 32170938 JUN TRANSFAC yes 32169920 1011 118267091
chr1 32170934 32170945 NRL JASPAR yes 32169920 1014 118267092
chr1 32170939 32170945 ETS1 JASPAR yes 32169920 1019 118267093
chr1 32170939 32170950 NFKB1 JASPAR yes 32169920 1019 118267094
chr1 32170940 32170950 RELA JASPAR yes 32169920 1020 118267095
chr1 32170940 32170950 REL JASPAR yes 32169920 1020 118267096
chr1 32170944 32170964 RREB1 JASPAR yes 32169920 1024 118267097
chr1 32170950 32170960 SP1 JASPAR yes 32169920 1030 118267098
chr1 32170962 32170978 GLIS1 JASPAR yes 32169920 1042 118267099
chr1 32170963 32170977 ZIC1 JASPAR yes 32169920 1043 118267100
chr1 32170963 32170978 ZIC3 JASPAR yes 32169920 1043 118267101
chr1 32170963 32170978 ZIC4 JASPAR yes 32169920 1043 118267102
chr1 32170970 32170982 GLI2 JASPAR yes 32169920 1050 118267103
chr1 32170976 32170980 H4TF2 TRANSFAC yes 32169920 1056 118267104
chr1 32170994 32171007 ZBTB18 JASPAR yes 32169920 1074 118267105
chr1 32171000 32171015 RFX5 JASPAR yes 32169920 1080 118267106
chr1 32171004 32171024 RREB1 JASPAR yes 32169920 1084 118267107
chr1 32171017 32171022 SP1 TRANSFAC yes 32169920 1097 118267108
chr1 32171020 32171025 SP1 TRANSFAC yes 32169920 1100 118267109
chr1 32171027 32171032 ETS2 TRANSFAC yes 32169920 1107 118267110
chr1 32171029 32171040 NRL JASPAR yes 32169920 1109 118267111
chr1 32171036 32171043 JUN TRANSFAC yes 32169920 1116 118267112
chr1 32171039 32171054 ZIC4 JASPAR yes 32169920 1119 118267113
chr1 32171040 32171054 ZIC1 JASPAR yes 32169920 1120 118267114
chr1 32171043 32171057 E2F7 JASPAR yes 32169920 1123 118267115
chr1 32171045 32171056 E2F1 JASPAR yes 32169920 1125 118267116
chr1 32171046 32171051 SP1 TRANSFAC yes 32169920 1126 118267117
chr1 32171046 32171057 E2F4 JASPAR yes 32169920 1126 118267118
chr1 32171046 32171057 E2F6 JASPAR yes 32169920 1126 118267119
chr1 32171047 32171052 SP1 TRANSFAC yes 32169920 1127 118267120
chr1 32171050 32171055 ETS2 TRANSFAC yes 32169920 1130 118267121
chr1 32171058 32171068 ZNF740 JASPAR yes 32169920 1138 118267122
chr1 32171060 32171070 SP1 JASPAR yes 32169920 1140 118267123
chr1 32171063 32171068 SP1 TRANSFAC yes 32169920 1143 118267124
chr1 32171066 32171071 SP1 TRANSFAC yes 32169920 1146 118267125
chr1 32171075 32171094 REST JASPAR yes 32169920 1155 118267126
chr1 32171076 32171091 HNF4A JASPAR yes 32169920 1156 118267127
chr1 32171077 32171092 HNF4G JASPAR yes 32169920 1157 118267128
chr1 32171084 32171099 TFAP2C JASPAR yes 32169920 1164 118267129
chr1 32171094 32171099 SP1 TRANSFAC yes 32169920 1174 118267130
chr1 32171098 32171103 SP1 TRANSFAC yes 32169920 1178 118267131
chr1 32171098 32171107 HIC2 JASPAR yes 32169920 1178 118267132
chr1 32171101 32171105 LFA1 TRANSFAC yes 32169920 1181 118267133
chr1 32171110 32171116 SP1 TRANSFAC yes 32169920 1190 118267134
chr1 32171134 32171140 NFE2 TRANSFAC yes 32169920 1214 118267135
chr1 32171136 32171155 CTCF JASPAR yes 32169920 1216 118267136
chr1 32171144 32171153 HIC2 JASPAR yes 32169920 1224 118267137
chr1 32171146 32171165 REST JASPAR yes 32169920 1226 118267138
chr1 32171147 32171151 LFA1 TRANSFAC yes 32169920 1227 118267139
chr1 32171159 32171170 TBX20 JASPAR yes 32169920 1239 118267140
chr1 32171160 32171168 TBX15 JASPAR yes 32169920 1240 118267141
chr1 32171160 32171171 E2F6 JASPAR yes 32169920 1240 118267142
chr1 32171161 32171166 SP1 TRANSFAC yes 32169920 1241 118267143
chr1 32171164 32171169 ETS2 TRANSFAC yes 32169920 1244 118267144
chr1 32171173 32171183 RORA JASPAR yes 32169920 1253 118267145
chr1 32171178 32171182 ESR1 TRANSFAC yes 32169920 1258 118267146
SNPs associated with COL16A1[ENSG00000084636.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 31637350 rs140014667 C A 480498 Esophagus 0.0886809 210054
chr1 32188994 rs3862892 A G 19074 Esophagus 0.00255924 214273
chr1 32718415 rs79853649 C G 548495 Esophagus 0.280094 217504
chr1 32177704 rs12072552 C A 7784 Heart 0.090907 214163
chr1 31519985 rs138896980 G A 597863 Ovary 0.647382 208649
chr1 31569822 rs12061424 C A,T 548026 Uterus 0.206345 208967
chr1 32173396 rs4354582 C T 3476 Thyroid 9.05219e-10 214121
chr1 31320804 rs61767331 A C 797044 Liver 0.298413 206962
Details of COL16A1[ENSG00000084636.13]
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Genomic Location chr1:32117848-32169920[-]
TSS 32169920
Gene Name COL16A1
Ensembl ID ENSG00000084636.13
ENTREZID 1307
Uniprot
Q07092
Protein Name
Collagen alpha-1(XVI) chain
Expression levels of COL16A1[ENSG00000084636.13]
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