EnhancerDB
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Enhancers that regulate GMCL1[ENSG00000087338.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr2 69958625 69967555 enh18646 70056774 89219
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Thyroid Placenta Lung (PC-9) Pancreas
chr2 69972645 69979535 enh101592 70056774 77239
Thyroid
chr2 69981154 69985686 enh18647 70056774 71088
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Bone (Osteoblast) Placenta Colon (HCT116) Muscle (Myoblast) Breast Pancreas (Panc1) Uterus Epithelial (MCF-7)
chr2 69981246 69981481 vista31965 70056774 75293
VISTA
chr2 69988005 70013615 enh18648 70056774 43159
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1)
chr2 69989990 69990667 vista31966 70056774 66107
VISTA
chr2 69997386 69997753 vista31967 70056774 59021
VISTA
chr2 70000495 70000634 vista31968 70056774 56140
VISTA
chr2 70004336 70004726 vista31969 70056774 52048
VISTA
chr2 70014385 70020487 enh18649 70056774 36287
Blood (OCI-LY7) Blood (GM12878) Placenta Uterus Neural Stem Cells (H9) Stomach
chr2 70021345 70028555 enh18650 70056774 28219
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Placenta Lung (PC-9) Muscle (Myotube) Uterus Thymus Stomach
chr2 70048617 70048893 vista31970 70056774 7881
VISTA
chr2 70057532 70057914 vista31971 70056774 758
VISTA
chr2 70082845 70088335 enh81712 70056774 26071
Prostate (PC-3) Epithelial (MCF-7)
chr2 70137188 70147795 enh5636 70056774 80414
Prostate (RWPE1) Uterus Blood (Karpas-422)
chr2 70141198 70141461 vista31972 70056774 84424
VISTA
chr2 70144957 70145388 vista31973 70056774 88183
VISTA
chr2 70145725 70146134 vista31974 70056774 88951
VISTA
chr2 70152325 70156635 enh18651 70056774 95551
Placenta Liver (HepG2) Large Intestine Lung (PC-9)
chr2 70154281 70154743 vista31975 70056774 97507
VISTA
Transcript facotrs that regulate GMCL1[ENSG00000087338.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr2 70057558 70057569 HOXC11 JASPAR yes 70056774 784 22078611
chr2 70057558 70057569 HOXC12 JASPAR yes 70056774 784 22078612
chr2 70057558 70057569 HOXC13 JASPAR yes 70056774 784 22078613
chr2 70057559 70057569 HOXC10 JASPAR yes 70056774 785 22078614
chr2 70057559 70057569 HOXD11 JASPAR yes 70056774 785 22078615
chr2 70057562 70057574 HNF1B JASPAR yes 70056774 788 22078616
chr2 70057576 70057581 SP1 TRANSFAC yes 70056774 802 22078617
chr2 70057589 70057600 NFKB1 JASPAR yes 70056774 815 22078618
chr2 70057602 70057616 PLAG1 JASPAR yes 70056774 828 22078619
chr2 70057602 70057616 RXRB JASPAR yes 70056774 828 22078620
chr2 70057602 70057616 RXRG JASPAR yes 70056774 828 22078621
chr2 70057602 70057617 NR2C2 JASPAR yes 70056774 828 22078622
chr2 70057615 70057624 NKX2-8 JASPAR yes 70056774 841 22078623
chr2 70057615 70057625 NKX2-3 JASPAR yes 70056774 841 22078624
chr2 70057646 70057656 ELK1 JASPAR yes 70056774 872 22078625
chr2 70057646 70057656 ELK3 JASPAR yes 70056774 872 22078626
chr2 70057646 70057656 ERF JASPAR yes 70056774 872 22078627
chr2 70057646 70057656 ERG JASPAR yes 70056774 872 22078628
chr2 70057646 70057656 ETS1 JASPAR yes 70056774 872 22078629
chr2 70057646 70057656 ETV1 JASPAR yes 70056774 872 22078630
chr2 70057646 70057656 ETV3 JASPAR yes 70056774 872 22078631
chr2 70057646 70057656 ETV4 JASPAR yes 70056774 872 22078632
chr2 70057646 70057656 ETV5 JASPAR yes 70056774 872 22078633
chr2 70057646 70057656 FEV JASPAR yes 70056774 872 22078634
chr2 70057646 70057656 FLI1 JASPAR yes 70056774 872 22078635
chr2 70057646 70057657 ETV2 JASPAR yes 70056774 872 22078636
chr2 70057646 70057657 SPDEF JASPAR yes 70056774 872 22078637
chr2 70057647 70057656 ELK4 JASPAR yes 70056774 873 22078638
chr2 70057649 70057668 RFX2 JASPAR yes 70056774 875 22078639
chr2 70057653 70057669 RFX5 JASPAR yes 70056774 879 22078640
chr2 70057674 70057685 DUX4 JASPAR yes 70056774 900 22078641
chr2 70057712 70057728 GLIS1 JASPAR yes 70056774 938 22078642
chr2 70057713 70057727 GLIS3 JASPAR yes 70056774 939 22078643
chr2 70057723 70057731 FOXC1 JASPAR yes 70056774 949 22078644
chr2 70057725 70057732 NKX3-1 JASPAR yes 70056774 951 22078645
chr2 70057728 70057736 DLX6 JASPAR yes 70056774 954 22078646
chr2 70057728 70057736 MSX1 JASPAR yes 70056774 954 22078647
chr2 70057751 70057759 BARX1 JASPAR yes 70056774 977 22078648
chr2 70057757 70057771 SPI1 JASPAR yes 70056774 983 22078649
chr2 70057770 70057780 CUX1 JASPAR yes 70056774 996 22078650
chr2 70057770 70057780 CUX2 JASPAR yes 70056774 996 22078651
chr2 70057784 70057788 YY1 TRANSFAC yes 70056774 1010 22078652
chr2 70057792 70057802 HMBOX1 JASPAR yes 70056774 1018 22078653
chr2 70057794 70057797 MYB TRANSFAC yes 70056774 1020 22078654
chr2 70057799 70057814 AR JASPAR yes 70056774 1025 22078655
chr2 70057822 70057834 HNF1B JASPAR yes 70056774 1048 22078656
chr2 70057847 70057853 ZNF354C JASPAR yes 70056774 1073 22078657
chr2 70057864 70057870 SP1 TRANSFAC yes 70056774 1090 22078658
chr2 70057865 70057870 SP1 TRANSFAC yes 70056774 1091 22078659
chr2 70057888 70057891 MYB TRANSFAC yes 70056774 1114 22078660
chr2 70057889 70057910 IRF1 JASPAR yes 70056774 1115 22078661
chr2 70057893 70057908 FOXP1 JASPAR yes 70056774 1119 22078662
chr2 70057894 70057909 FOXP1 JASPAR yes 70056774 1120 22078663
chr2 70057895 70057910 FOXP1 JASPAR yes 70056774 1121 22078664
chr2 70057896 70057911 FOXP1 JASPAR yes 70056774 1122 22078665
chr2 70057897 70057912 FOXP1 JASPAR yes 70056774 1123 22078666
chr2 70057898 70057913 FOXP1 JASPAR yes 70056774 1124 22078667
SNPs associated with GMCL1[ENSG00000087338.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr2 70327760 rs115030451 G T 219232 Esophagus 0.325775 5833531
chr2 70354790 rs116219267 G A,T 246262 Esophagus 0.300996 5833836
chr2 69835402 rs138593509 C T 221372 Heart 0.00289568 5829582
chr2 69995580 rs9309429 A G 61194 Heart 0.0158628 5831178
chr2 70722763 rs11466229 G A 614235 Ovary 0.470442 5835712
chr2 69258488 rs62135612 T C 798286 Uterus 0.470874 5825980
Details of GMCL1[ENSG00000087338.4]
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Genomic Location chr2:70056774-70108528[+]
TSS 70056774
Gene Name GMCL1
Ensembl ID ENSG00000087338.4
ENTREZID 64395
Uniprot
Q96IK5
Q53SE7
Protein Name
Germ cell-less homolog 1
Germ cell-less protein-like 1
Expression levels of GMCL1[ENSG00000087338.4]
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