EnhancerDB
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Enhancers that regulate VPS18[ENSG00000104142.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 41072825 41093715 enh16067 41186628 92913
Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr15 41113869 41119175 enh16068 41186628 67453
Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Stomach Placenta Colon (HCT116) Lung (PC-9) Epithelial (MCF-7)
chr15 41123696 41130535 enh86184 41186628 56093
Colon (HCT116) Cervix (HeLa-S3)
chr15 41136165 41141972 enh16069 41186628 44656
Bone Marrow (K562) Cervix (HeLa-S3) Prostate (RWPE1) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Thymus
chr15 41138213 41138409 vista19742 41186628 48219
VISTA
chr15 41139695 41139794 vista19743 41186628 46834
VISTA
chr15 41148025 41160415 enh57663 41186628 26213
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Lung (A549) Stomach Colon (HCT116) Lung (PC-9) Pancreas Epithelial (MCF-7)
chr15 41158071 41158384 vista19744 41186628 28244
VISTA
chr15 41161085 41165235 enh109669 41186628 21393
Stomach
chr15 41185333 41185514 vista19745 41186628 1114
VISTA
chr15 41192765 41214015 enh3543 41186628 6137
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Heart
chr15 41199675 41199878 vista19746 41186628 13047
VISTA
chr15 41203373 41203552 vista19747 41186628 16745
VISTA
chr15 41219895 41220240 vista19748 41186628 33267
VISTA
chr15 41220555 41220912 vista19749 41186628 33927
VISTA
chr15 41230125 41237095 enh16070 41186628 43497
Cervix (HeLa-S3) Blood (T-cell) Placenta Colon (HCT116) Uterus Thymus
chr15 41233721 41234461 vista19750 41186628 47093
VISTA
chr15 41249652 41255415 enh16071 41186628 63024
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Placenta Colon (HCT116) Neural Stem Cells (H9) Epithelial (MCF-7)
chr15 41254301 41254691 vista19751 41186628 67673
VISTA
chr15 41256065 41261335 enh88160 41186628 69437
Pancreas Uterus
chr15 41262245 41270215 enh16072 41186628 75617
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Muscle (A673) Placenta Epithelial (MCF-7)
chr15 41264604 41264924 vista19752 41186628 77976
VISTA
chr15 41281625 41286915 enh16073 41186628 94997
Astrocyte Muscle (A673) Placenta Spleen Stomach
Transcript facotrs that regulate VPS18[ENSG00000104142.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 41184456 41185611 ZNF274 GTRD no Bone Marrow (K562) 41186628 1017 108134703
chr15 41184478 41185490 ZBTB33 GTRD no Lung (A549) 41186628 1138 108134704
chr15 41184510 41185607 ZBTB33 GTRD no Lung (A549) 41186628 1021 108134705
chr15 41184532 41185480 ZNF143 GTRD no Epithelial (MCF-7) 41186628 1148 108134706
chr15 41184565 41185502 ZNF274 GTRD no Cervix (HeLa-S3) 41186628 1126 108134707
chr15 41184578 41185511 ZNF143 GTRD no Epithelial (MCF-7) 41186628 1117 108134708
chr15 41184603 41185404 ZNF274 GTRD no Bone Marrow (K562) 41186628 1224 108134709
chr15 41184707 41185452 ZNF274 GTRD no Blood (GM12878) 41186628 1176 108134710
chr15 41184782 41185452 ZNF274 GTRD no Blood (GM12878) 41186628 1176 108134711
chr15 41184807 41185397 ZNF274 GTRD no Bone Marrow (K562) 41186628 1231 108134712
chr15 41184808 41185391 ZBTB33 GTRD no Lung (A549) 41186628 1237 108134713
chr15 41184842 41185417 ZNF274 GTRD no Liver (HepG2) 41186628 1211 108134714
chr15 41184899 41185388 ZNF274 GTRD no Bone Marrow (K562) 41186628 1240 108134715
chr15 41185292 41185492 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 41186628 1136 108134716
chr15 41185318 41185542 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 41186628 1086 108134717
chr15 41185338 41185344 SP1 TRANSFAC yes 41186628 1284 70512761
chr15 41185359 41185365 GATA3 JASPAR yes 41186628 1263 70512762
chr15 41185362 41185381 REST JASPAR yes 41186628 1247 70512763
chr15 41185378 41185391 SMAD2 JASPAR yes 41186628 1237 70512764
chr15 41185397 41185409 HES5 JASPAR yes 41186628 1219 70512765
chr15 41185397 41185409 HES7 JASPAR yes 41186628 1219 70512766
chr15 41185398 41185408 HEY1 JASPAR yes 41186628 1220 70512767
chr15 41185398 41185408 HEY2 JASPAR yes 41186628 1220 70512768
chr15 41185398 41185408 MAX JASPAR yes 41186628 1220 70512769
chr15 41185398 41185408 MNT JASPAR yes 41186628 1220 70512770
chr15 41185398 41185409 USF1 JASPAR yes 41186628 1219 70512771
chr15 41185398 41185409 USF2 JASPAR yes 41186628 1219 70512772
chr15 41185399 41185409 MAX JASPAR yes 41186628 1219 70512773
chr15 41185400 41185405 MYC TRANSFAC yes 41186628 1223 70512774
chr15 41185400 41185405 USF1 TRANSFAC yes 41186628 1223 70512775
chr15 41185400 41185405 USF2 TRANSFAC yes 41186628 1223 70512776
chr15 41185400 41185407 USF1 JASPAR yes 41186628 1221 70512777
chr15 41185404 41185417 ELF1 JASPAR yes 41186628 1211 70512778
chr15 41185406 41185417 ELF5 JASPAR yes 41186628 1211 70512779
chr15 41185407 41185414 ETS1 TRANSFAC yes 41186628 1214 70512780
chr15 41185407 41185417 ETV6 JASPAR yes 41186628 1211 70512781
chr15 41185407 41185418 ELK4 JASPAR yes 41186628 1210 70512782
chr15 41185407 41185418 FLI1 JASPAR yes 41186628 1210 70512783
chr15 41185408 41185416 EHF JASPAR yes 41186628 1212 70512784
chr15 41185408 41185416 FEV JASPAR yes 41186628 1212 70512785
chr15 41185409 41185416 SPI1 JASPAR yes 41186628 1212 70512786
chr15 41185426 41185429 MYB TRANSFAC yes 41186628 1199 70512787
chr15 41185431 41185441 RUNX3 JASPAR yes 41186628 1187 70512788
chr15 41185431 41185442 RUNX1 JASPAR yes 41186628 1186 70512789
chr15 41185432 41185444 SRF JASPAR yes 41186628 1184 70512790
chr15 41185453 41185468 HSF1 JASPAR yes 41186628 1160 70512791
chr15 41185474 41185494 TP53 JASPAR yes 41186628 1134 70512792
chr15 41185486 41185501 RFX5 JASPAR yes 41186628 1127 70512793
chr15 41185495 41185500 SP1 TRANSFAC yes 41186628 1128 70512794
chr15 41185496 41185501 SP1 TRANSFAC yes 41186628 1127 70512795
chr15 41185496 41185502 SP1 TRANSFAC yes 41186628 1126 70512796
chr15 41185500 41185505 SP1 TRANSFAC yes 41186628 1123 70512797
chr15 41185504 41185509 SP1 TRANSFAC yes 41186628 1119 70512798
SNPs associated with VPS18[ENSG00000104142.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 41253978 rs147837062 G T 57805 Esophagus 0.0522552 3915458
chr15 41250556 rs57390752 G T 54383 Esophagus 0.0241739 3915408
chr15 40617414 rs961090 T C 569214 Heart 0.105759 3911782
chr15 41057507 rs72735627 C T 129121 Pancreas 0.371676 3914022
chr15 41579419 rs75056850 C T 383246 Uterus 0.47967 3917089
chr15 41838687 rs117456080 C T 642514 Liver 0.0604246 3917846
chr15 41008041 rs45475397 C T 178587 Stomach 0.338101 3913794
Details of VPS18[ENSG00000104142.6]
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Genomic Location chr15:41186628-41196173[+]
TSS 41186628
Gene Name VPS18
Ensembl ID ENSG00000104142.6
ENTREZID 57617
Uniprot
Q9P253
A0A024R9R3
Protein Name
isoform CRA_d
Vacuolar protein sorting protein 18
Vacuolar protein sorting-associated protein 18 homolog
Expression levels of VPS18[ENSG00000104142.6]
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