EnhancerDB
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Enhancers that regulate LHX4[ENSG00000121454.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 180090529 180108295 enh12420 180199421 91126
Prostate (PC-3) Liver (HepG2) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Epithelial (MCF-7)
chr1 180100723 180101052 vista4064 180199421 98369
VISTA
chr1 180111905 180116855 enh12421 180199421 82566
Placenta
chr1 180120187 180120425 vista4065 180199421 78996
VISTA
chr1 180124885 180142635 enh12422 180199421 56786
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Prostate (RWPE1) Stomach Muscle (A673) Placenta Lung (PC-9) Pancreas Muscle (Myotube) Heart
chr1 180180685 180184835 enh103142 180199421 14586
Peripheral Blood (MM.1S)
chr1 180185392 180185610 vista4066 180199421 13811
VISTA
chr1 180200315 180200683 vista4067 180199421 894
VISTA
chr1 180200686 180200867 vista4068 180199421 1265
VISTA
chr1 180204072 180211372 enh102248 180199421 4651
Embryonic Stem Cell Line (H1-hESC)
chr1 180219700 180225635 enh87653 180199421 20279
Pancreas Embryonic Stem Cell Line (H1-hESC)
chr1 180237101 180237317 vista4069 180199421 37680
VISTA
chr1 180249791 180250006 vista4070 180199421 50370
VISTA
chr1 180250812 180250948 vista4071 180199421 51391
VISTA
chr1 180251899 180252130 vista4072 180199421 52478
VISTA
chr1 180256705 180262395 enh79274 180199421 57284
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2)
chr1 180265945 180270095 enh779 180199421 66524
Blood (Karpas-422)
chr1 180275825 180282838 enh27291 180199421 76404
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Astrocyte Lung (A549) Colon (HCT116) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Epithelial (MCF-7)
Transcript facotrs that regulate LHX4[ENSG00000121454.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 180199515 180206254 EZH2 UCSC Txn Factor no Conserved 180199421 94 107847685
chr1 180199515 180206254 EZH2 UCSC Txn Factor no Conserved 180199421 94 107847686
chr1 180199554 180200600 ZNF274 GTRD no Liver (HepG2) 180199421 133 107847687
chr1 180199756 180200666 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 335 107847688
chr1 180199831 180200445 ZNF274 GTRD no Blood (GM12878) 180199421 410 107847689
chr1 180199923 180201142 E2F1 UCSC Txn Factor no Conserved 180199421 502 107847690
chr1 180199923 180201142 E2F1 UCSC Txn Factor no Conserved 180199421 502 107847691
chr1 180199923 180201142 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 180199421 502 107847692
chr1 180199923 180201142 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 180199421 502 107847693
chr1 180200027 180200543 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 606 107847694
chr1 180200033 180200523 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 612 107847695
chr1 180200061 180200571 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 640 107847696
chr1 180200062 180200592 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 641 107847697
chr1 180200075 180200471 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 654 107847698
chr1 180200082 180200466 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 661 107847699
chr1 180200090 180200460 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 669 107847700
chr1 180200108 180200618 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 687 107847701
chr1 180200116 180200472 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 695 107847702
chr1 180200129 180200479 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 180199421 708 107847703
chr1 180200135 180200459 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 180199421 714 107847704
chr1 180200162 180200426 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 741 107847705
chr1 180200163 180200419 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 742 107847706
chr1 180200167 180200491 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 746 107847707
chr1 180200183 180200493 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 762 107847708
chr1 180200186 180200411 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 765 107847709
chr1 180200188 180200444 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 767 107847710
chr1 180200202 180200382 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 781 107847711
chr1 180200208 180200878 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 787 107847712
chr1 180200208 180200878 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 787 107847713
chr1 180200250 180200456 TEAD4 UCSC Txn Factor no Conserved 180199421 829 107847714
chr1 180200250 180200456 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 829 107847715
chr1 180200254 180200535 ZNF143 GTRD no Epithelial (MCF-7) 180199421 833 107847716
chr1 180200315 180200845 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 894 107847717
chr1 180200315 180200845 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 894 107847718
chr1 180200338 180200348 TEAD1 JASPAR yes 180199421 917 118406695
chr1 180200338 180200348 TEAD4 JASPAR yes 180199421 917 118406696
chr1 180200338 180200350 TEAD1 JASPAR yes 180199421 917 118406697
chr1 180200339 180200347 TEAD3 JASPAR yes 180199421 918 118406698
chr1 180200352 180200364 TEAD1 JASPAR yes 180199421 931 118406699
chr1 180200354 180200364 TEAD1 JASPAR yes 180199421 933 118406700
chr1 180200354 180200375 ZNF263 JASPAR yes 180199421 933 118406701
chr1 180200355 180200363 TEAD3 JASPAR yes 180199421 934 118406702
chr1 180200357 180200378 ZNF263 JASPAR yes 180199421 936 118406703
chr1 180200358 180200379 ZNF263 JASPAR yes 180199421 937 118406704
chr1 180200365 180200371 MAZ TRANSFAC yes 180199421 944 118406705
chr1 180200365 180200376 E2F6 JASPAR yes 180199421 944 118406706
chr1 180200384 180200394 TBX21 JASPAR yes 180199421 963 118406707
chr1 180200384 180200395 TBX20 JASPAR yes 180199421 963 118406708
chr1 180200390 180200403 ELF3 JASPAR yes 180199421 969 118406709
chr1 180200391 180200403 EHF JASPAR yes 180199421 970 118406710
chr1 180200391 180200403 ELF4 JASPAR yes 180199421 970 118406711
chr1 180200421 180200425 LFA1 TRANSFAC yes 180199421 1000 118406712
chr1 180200422 180200431 SNAI2 JASPAR yes 180199421 1001 118406713
chr1 180200422 180200432 ID4 JASPAR yes 180199421 1001 118406714
chr1 180200422 180200432 NHLH1 JASPAR yes 180199421 1001 118406715
chr1 180200422 180200432 TCF3 JASPAR yes 180199421 1001 118406716
chr1 180200422 180200432 TCF4 JASPAR yes 180199421 1001 118406717
chr1 180200449 180200459 MZF1 JASPAR yes 180199421 1028 118406718
chr1 180200461 180201057 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 180199421 1040 107847719
chr1 180200461 180201057 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 180199421 1040 107847720
chr1 180200463 180200477 PLAG1 JASPAR yes 180199421 1042 118406719
chr1 180200478 180200484 TCF4 TRANSFAC yes 180199421 1057 118406720
chr1 180200484 180200924 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 180199421 1063 107847721
chr1 180200484 180200924 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 180199421 1063 107847722
chr1 180200488 180200497 THAP1 JASPAR yes 180199421 1067 118406721
chr1 180200490 180200497 SP1 TRANSFAC yes 180199421 1069 118406722
chr1 180200492 180200497 SP1 TRANSFAC yes 180199421 1071 118406723
chr1 180200502 180200513 E2F4 JASPAR yes 180199421 1081 118406724
chr1 180200502 180200513 E2F6 JASPAR yes 180199421 1081 118406725
chr1 180200503 180200514 E2F1 JASPAR yes 180199421 1082 118406726
chr1 180200517 180200525 HOXA5 JASPAR yes 180199421 1096 118406727
chr1 180200517 180201021 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1096 107847723
chr1 180200517 180201021 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1096 107847724
chr1 180200544 180200555 FOXP2 JASPAR yes 180199421 1123 118406728
chr1 180200544 180200558 FOXF2 JASPAR yes 180199421 1123 118406729
chr1 180200545 180200553 FOXG1 JASPAR yes 180199421 1124 118406730
chr1 180200550 180200555 GATA2 JASPAR yes 180199421 1129 118406731
chr1 180200552 180200558 MZF1 JASPAR yes 180199421 1131 118406732
chr1 180200598 180200994 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1177 107847725
chr1 180200598 180200994 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1177 107847726
chr1 180200629 180201005 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 180199421 1208 107847727
chr1 180200629 180201005 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 180199421 1208 107847728
chr1 180200632 180200982 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 180199421 1211 107847729
chr1 180200632 180200982 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 180199421 1211 107847730
chr1 180200642 180200655 TFAP2B JASPAR yes 180199421 1221 118406733
chr1 180200642 180200655 TFAP2C JASPAR yes 180199421 1221 118406734
chr1 180200656 180200671 HNF4G JASPAR yes 180199421 1235 118406735
chr1 180200657 180200671 NR2F1 JASPAR yes 180199421 1236 118406736
chr1 180200657 180200672 HNF4A JASPAR yes 180199421 1236 118406737
chr1 180200665 180200929 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1244 107847731
chr1 180200665 180200929 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1244 107847732
chr1 180200672 180200681 SNAI2 JASPAR yes 180199421 1251 118406738
chr1 180200672 180200682 ID4 JASPAR yes 180199421 1251 118406739
chr1 180200672 180200682 TCF3 JASPAR yes 180199421 1251 118406740
chr1 180200672 180200682 TCF4 JASPAR yes 180199421 1251 118406741
chr1 180200689 180200700 NRF1 JASPAR yes 180199421 1268 118406742
chr1 180200690 180200701 NRF1 JASPAR yes 180199421 1269 118406743
chr1 180200691 180200702 NRF1 JASPAR yes 180199421 1270 118406744
chr1 180200692 180200703 NRF1 JASPAR yes 180199421 1271 118406745
chr1 180200693 180200704 NRF1 JASPAR yes 180199421 1272 118406746
chr1 180200694 180200705 NRF1 JASPAR yes 180199421 1273 118406747
chr1 180200695 180200706 NRF1 JASPAR yes 180199421 1274 118406748
chr1 180200696 180200707 NRF1 JASPAR yes 180199421 1275 118406749
chr1 180200697 180200708 NRF1 JASPAR yes 180199421 1276 118406750
chr1 180200698 180200709 NRF1 JASPAR yes 180199421 1277 118406751
chr1 180200699 180200710 NRF1 JASPAR yes 180199421 1278 118406752
chr1 180200700 180200711 NRF1 JASPAR yes 180199421 1279 118406753
chr1 180200701 180200712 NRF1 JASPAR yes 180199421 1280 118406754
chr1 180200702 180200713 NRF1 JASPAR yes 180199421 1281 118406755
chr1 180200731 180200737 NFE2 TRANSFAC yes 180199421 1310 118406756
chr1 180200731 180201155 CTCF UCSC Txn Factor no Conserved 180199421 1310 107847733
chr1 180200732 180200745 TFAP2A JASPAR yes 180199421 1311 118406757
chr1 180200732 180200745 TFAP2B JASPAR yes 180199421 1311 118406758
chr1 180200732 180200747 RUNX2 JASPAR yes 180199421 1311 118406759
chr1 180200750 180200765 ZIC3 JASPAR yes 180199421 1329 118406760
chr1 180200750 180200765 ZIC4 JASPAR yes 180199421 1329 118406761
chr1 180200751 180200765 ZIC1 JASPAR yes 180199421 1330 118406762
chr1 180200759 180201029 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 180199421 1338 107847734
chr1 180200760 180201096 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 1339 107847735
chr1 180200761 180200772 TFAP2A JASPAR yes 180199421 1340 118406763
chr1 180200761 180200772 TFAP2B JASPAR yes 180199421 1340 118406764
chr1 180200761 180200772 TFAP2C JASPAR yes 180199421 1340 118406765
chr1 180200762 180200771 TFAP2A JASPAR yes 180199421 1341 118406766
chr1 180200765 180200786 REST JASPAR yes 180199421 1344 118406767
chr1 180200766 180200785 REST JASPAR yes 180199421 1345 118406768
chr1 180200767 180200771 LFA1 TRANSFAC yes 180199421 1346 118406769
chr1 180200771 180200782 EBF1 JASPAR yes 180199421 1350 118406770
chr1 180200791 180201051 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1370 107847736
chr1 180200792 180201062 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 1371 107847737
chr1 180200800 180201044 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 180199421 1379 107847738
chr1 180200803 180200812 NFIX JASPAR yes 180199421 1382 118406771
chr1 180200805 180200811 NFIC JASPAR yes 180199421 1384 118406772
chr1 180200817 180200827 HINFP JASPAR yes 180199421 1396 118406773
chr1 180200817 180200828 ELK4 JASPAR yes 180199421 1396 118406774
chr1 180200817 180200830 ELF3 JASPAR yes 180199421 1396 118406775
chr1 180200818 180200828 ELK1 JASPAR yes 180199421 1397 118406776
chr1 180200818 180200828 ELK3 JASPAR yes 180199421 1397 118406777
chr1 180200818 180200828 ETV1 JASPAR yes 180199421 1397 118406778
chr1 180200818 180200828 ETV4 JASPAR yes 180199421 1397 118406779
chr1 180200818 180200828 ETV5 JASPAR yes 180199421 1397 118406780
chr1 180200818 180200828 ETV6 JASPAR yes 180199421 1397 118406781
chr1 180200818 180200829 ELF5 JASPAR yes 180199421 1397 118406782
chr1 180200818 180200830 EHF JASPAR yes 180199421 1397 118406783
chr1 180200818 180200830 ELF1 JASPAR yes 180199421 1397 118406784
chr1 180200818 180200830 ELF4 JASPAR yes 180199421 1397 118406785
chr1 180200818 180200831 ELF1 JASPAR yes 180199421 1397 118406786
chr1 180200820 180200826 ETS1 JASPAR yes 180199421 1399 118406787
chr1 180200820 180200826 SPI1 JASPAR yes 180199421 1399 118406788
chr1 180200827 180201057 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 180199421 1406 107847739
chr1 180200864 180201026 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 180199421 1443 107847740
SNPs associated with LHX4[ENSG00000121454.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 180239535 rs1043744 T C 0 Pancreas 1.00104e-11 763212
chr1 180239535 rs1043744 T C 0 Spleen 1.90284e-05 763212
chr1 180313182 rs75173421 G A 63802 Ovary 0.103914 763500
chr1 180239535 rs1043744 T C 0 Liver 0.0011331 763212
Details of LHX4[ENSG00000121454.4]
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Genomic Location chr1:180199421-180249380[+]
TSS 180199421
Gene Name LHX4
Ensembl ID ENSG00000121454.4
ENTREZID 89884
Uniprot
Q969G2
A0A0S2Z5S4
Protein Name
LIM homeobox 4 isoform 1
LIM homeobox 4 isoform 2
LIM homeobox 4 transcript variant
LIM homeobox protein 4
LIM/homeobox protein Lhx4
Expression levels of LHX4[ENSG00000121454.4]
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