EnhancerDB
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Enhancers that regulate COPA[ENSG00000122218.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 160214925 160219075 enh87640 160313190 94115
Pancreas
chr1 160219285 160229475 enh43061 160313190 83715
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Lung (PC-9) Liver Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Heart
chr1 160230168 160230604 vista3577 160313190 82586
VISTA
chr1 160242090 160242278 vista3578 160313190 70912
VISTA
chr1 160316870 160317108 vista3579 160313190 3680
VISTA
chr1 160332348 160332525 vista3580 160313190 19158
VISTA
chr1 160341585 160349639 enh675 160313190 28395
Bone Marrow (K562) Esophagus Blood (OCI-LY7) Stomach Muscle (A673) Blood (Karpas-422) Pancreas Heart
chr1 160344568 160344717 vista3581 160313190 31378
VISTA
chr1 160345693 160345986 vista3582 160313190 32503
VISTA
chr1 160371929 160383735 enh27155 160313190 58739
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Esophagus Astrocyte Embryonic Stem Cell Line (H1-hESC) Neural Stem Cells (H9) Thymus Stomach
chr1 160376163 160376541 vista3583 160313190 62973
VISTA
chr1 160377718 160378261 vista3584 160313190 64528
VISTA
chr1 160379189 160379307 vista3585 160313190 65999
VISTA
chr1 160396184 160404675 enh676 160313190 82994
Blood (OCI-LY7) Peripheral Blood (MM.1S) Blood (T-cell) Blood (Karpas-422)
chr1 160399608 160399975 vista3586 160313190 86418
VISTA
chr1 160402251 160402521 vista3587 160313190 89061
VISTA
chr1 160405290 160409955 enh677 160313190 92100
Blood (OCI-LY7) Large Intestine Thymus Blood (Karpas-422)
chr1 160407857 160407975 vista3588 160313190 94667
VISTA
Transcript facotrs that regulate COPA[ENSG00000122218.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 160316706 160317022 EBF1 UCSC Txn Factor no Conserved 160313190 3516 107839288
chr1 160316733 160317169 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3543 107839289
chr1 160316736 160317172 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3546 107839290
chr1 160316737 160317107 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3547 107839291
chr1 160316753 160317017 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3563 107839292
chr1 160316775 160317045 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3585 107839293
chr1 160316786 160317116 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3596 107839294
chr1 160316817 160317093 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3627 107839295
chr1 160316830 160317083 SPI1 UCSC Txn Factor no Conserved 160313190 3640 107839296
chr1 160316830 160317083 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3640 107839297
chr1 160316856 160317092 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160313190 3666 107839298
chr1 160316859 160317063 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 160313190 3669 107839299
chr1 160316871 160316886 MEF2C JASPAR yes 160313190 3681 118383382
chr1 160316914 160316924 MAX JASPAR yes 160313190 3724 118383383
chr1 160316914 160316925 USF1 JASPAR yes 160313190 3724 118383384
chr1 160316914 160316925 USF2 JASPAR yes 160313190 3724 118383385
chr1 160316914 160316926 HES5 JASPAR yes 160313190 3724 118383386
chr1 160316914 160316926 HES7 JASPAR yes 160313190 3724 118383387
chr1 160316915 160316925 BHLHE40 JASPAR yes 160313190 3725 118383388
chr1 160316915 160316925 HEY1 JASPAR yes 160313190 3725 118383389
chr1 160316915 160316925 HEY2 JASPAR yes 160313190 3725 118383390
chr1 160316915 160316925 MAX JASPAR yes 160313190 3725 118383391
chr1 160316915 160316925 MLX JASPAR yes 160313190 3725 118383392
chr1 160316915 160316925 MNT JASPAR yes 160313190 3725 118383393
chr1 160316915 160316925 TFE3 JASPAR yes 160313190 3725 118383394
chr1 160316915 160316925 TFEB JASPAR yes 160313190 3725 118383395
chr1 160316916 160316923 USF1 JASPAR yes 160313190 3726 118383396
chr1 160316917 160316922 MYC TRANSFAC yes 160313190 3727 118383397
chr1 160316917 160316922 USF1 TRANSFAC yes 160313190 3727 118383398
chr1 160316917 160316922 USF2 TRANSFAC yes 160313190 3727 118383399
chr1 160316930 160316951 ZNF263 JASPAR yes 160313190 3740 118383400
chr1 160316934 160316949 ZIC3 JASPAR yes 160313190 3744 118383401
chr1 160316935 160316949 ZIC1 JASPAR yes 160313190 3745 118383402
chr1 160316952 160316970 ESR1 JASPAR yes 160313190 3762 118383403
chr1 160316962 160316973 FLI1 JASPAR yes 160313190 3772 118383404
chr1 160316962 160316975 ELF3 JASPAR yes 160313190 3772 118383405
chr1 160316963 160316973 ETV6 JASPAR yes 160313190 3773 118383406
chr1 160316963 160316974 ELF5 JASPAR yes 160313190 3773 118383407
chr1 160316963 160316975 EHF JASPAR yes 160313190 3773 118383408
chr1 160316963 160316975 ELF1 JASPAR yes 160313190 3773 118383409
chr1 160316963 160316975 ELF4 JASPAR yes 160313190 3773 118383410
chr1 160316963 160316976 ELF1 JASPAR yes 160313190 3773 118383411
chr1 160316963 160316977 SPI1 JASPAR yes 160313190 3773 118383412
chr1 160316963 160316977 SPIC JASPAR yes 160313190 3773 118383413
chr1 160316964 160316971 SPI1 JASPAR yes 160313190 3774 118383414
chr1 160316964 160316972 EHF JASPAR yes 160313190 3774 118383415
chr1 160316967 160316977 POU6F2 JASPAR yes 160313190 3777 118383416
chr1 160316968 160316978 GSX1 JASPAR yes 160313190 3778 118383417
chr1 160316968 160316978 NOTO JASPAR yes 160313190 3778 118383418
chr1 160316969 160316977 NKX6-1 JASPAR yes 160313190 3779 118383419
chr1 160316969 160316977 NKX6-2 JASPAR yes 160313190 3779 118383420
chr1 160316971 160316975 YY1 TRANSFAC yes 160313190 3781 118383421
chr1 160316985 160316990 ETS2 TRANSFAC yes 160313190 3795 118383422
chr1 160317002 160317006 YY1 TRANSFAC yes 160313190 3812 118383423
chr1 160317015 160317029 SPIC JASPAR yes 160313190 3825 118383424
chr1 160317028 160317032 NFE TRANSFAC yes 160313190 3838 118383425
chr1 160317031 160317051 TP53 JASPAR yes 160313190 3841 118383426
chr1 160317048 160317053 SP1 TRANSFAC yes 160313190 3858 118383427
chr1 160317055 160317065 HOXB13 JASPAR yes 160313190 3865 118383428
chr1 160317055 160317065 HOXD13 JASPAR yes 160313190 3865 118383429
chr1 160317055 160317066 HOXA10 JASPAR yes 160313190 3865 118383430
chr1 160317056 160317066 ALX3 JASPAR yes 160313190 3866 118383431
chr1 160317056 160317066 EMX2 JASPAR yes 160313190 3866 118383432
chr1 160317056 160317066 ESX1 JASPAR yes 160313190 3866 118383433
chr1 160317056 160317066 GBX2 JASPAR yes 160313190 3866 118383434
chr1 160317056 160317066 GSX1 JASPAR yes 160313190 3866 118383435
chr1 160317056 160317066 GSX2 JASPAR yes 160313190 3866 118383436
chr1 160317056 160317066 HESX1 JASPAR yes 160313190 3866 118383437
chr1 160317056 160317066 HOXB2 JASPAR yes 160313190 3866 118383438
chr1 160317056 160317066 HOXB3 JASPAR yes 160313190 3866 118383439
chr1 160317056 160317066 LBX2 JASPAR yes 160313190 3866 118383440
chr1 160317056 160317066 LHX2 JASPAR yes 160313190 3866 118383441
chr1 160317056 160317066 LHX6 JASPAR yes 160313190 3866 118383442
chr1 160317056 160317066 MEOX1 JASPAR yes 160313190 3866 118383443
chr1 160317056 160317066 MEOX2 JASPAR yes 160313190 3866 118383444
chr1 160317056 160317066 MIXL1 JASPAR yes 160313190 3866 118383445
chr1 160317056 160317066 MNX1 JASPAR yes 160313190 3866 118383446
chr1 160317056 160317066 NOTO JASPAR yes 160313190 3866 118383447
chr1 160317056 160317066 POU6F1 JASPAR yes 160313190 3866 118383448
chr1 160317056 160317066 RAX JASPAR yes 160313190 3866 118383449
chr1 160317057 160317065 BSX JASPAR yes 160313190 3867 118383450
chr1 160317057 160317065 DLX6 JASPAR yes 160313190 3867 118383451
chr1 160317057 160317065 EN1 JASPAR yes 160313190 3867 118383452
chr1 160317057 160317065 ISX JASPAR yes 160313190 3867 118383453
chr1 160317057 160317065 LBX1 JASPAR yes 160313190 3867 118383454
chr1 160317057 160317065 LHX9 JASPAR yes 160313190 3867 118383455
chr1 160317057 160317065 LMX1A JASPAR yes 160313190 3867 118383456
chr1 160317057 160317065 LMX1B JASPAR yes 160313190 3867 118383457
chr1 160317057 160317065 NKX6-1 JASPAR yes 160313190 3867 118383458
chr1 160317057 160317065 NKX6-2 JASPAR yes 160313190 3867 118383459
chr1 160317057 160317065 PAX4 JASPAR yes 160313190 3867 118383460
chr1 160317057 160317065 PDX1 JASPAR yes 160313190 3867 118383461
chr1 160317057 160317065 PRRX1 JASPAR yes 160313190 3867 118383462
chr1 160317057 160317065 RAX2 JASPAR yes 160313190 3867 118383463
chr1 160317057 160317065 SHOX JASPAR yes 160313190 3867 118383464
chr1 160317057 160317065 UNCX JASPAR yes 160313190 3867 118383465
chr1 160317057 160317065 VAX1 JASPAR yes 160313190 3867 118383466
chr1 160317057 160317065 VAX2 JASPAR yes 160313190 3867 118383467
chr1 160317057 160317065 VSX1 JASPAR yes 160313190 3867 118383468
chr1 160317057 160317065 VSX2 JASPAR yes 160313190 3867 118383469
chr1 160317059 160317067 HOXA5 JASPAR yes 160313190 3869 118383470
chr1 160317071 160317074 MYB TRANSFAC yes 160313190 3881 118383471
chr1 160317091 160317106 IRF9 JASPAR yes 160313190 3901 118383472
SNPs associated with COPA[ENSG00000122218.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 161051052 rs142809535 A C 737862 Esophagus 0.121531 670115
chr1 160651969 rs141416351 G A 338779 Pancreas 0.279319 667340
chr1 160225596 rs9660289 C G 33467 Breast 0.312375 664495
chr1 160650141 rs3766367 G A 336951 Uterus 0.432328 667305
chr1 160582724 rs7550771 G A,T 269534 Lung 0.124597 666496
chr1 160461499 rs1249550 C T 148309 Stomach 0.233045 665513
chr1 160988485 rs67414804 G T 675295 Adrenal 0.262769 669873
Details of COPA[ENSG00000122218.10]
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Genomic Location chr1:160259063-160313190[-]
TSS 160313190
Gene Name COPA
Ensembl ID ENSG00000122218.10
ENTREZID 1314
Uniprot
P53621
Protein Name
Expression levels of COPA[ENSG00000122218.10]
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