EnhancerDB
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Enhancers that regulate LY9[ENSG00000122224.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 160672209 160680155 enh683 160765864 85709
Esophagus Blood (T-cell) Blood (Karpas-422)
chr1 160674845 160675222 vista3609 160765864 90642
VISTA
chr1 160677742 160679048 vista3610 160765864 86816
VISTA
chr1 160680120 160680523 vista3611 160765864 85341
VISTA
chr1 160680775 160680900 vista3612 160765864 84964
VISTA
chr1 160682568 160682866 vista3613 160765864 82998
VISTA
chr1 160684087 160684458 vista3614 160765864 81406
VISTA
chr1 160692305 160700079 enh12321 160765864 65785
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Large Intestine Ovary Esophagus Blood (GM12878) Placenta Peripheral Blood (MM.1S) Lung (PC-9) Spleen Neural Stem Cells (H9) Stomach
chr1 160696081 160696317 vista3615 160765864 69547
VISTA
chr1 160701970 160702334 vista3616 160765864 63530
VISTA
chr1 160703924 160703949 vista3617 160765864 61915
VISTA
chr1 160710126 160710934 vista3618 160765864 54930
VISTA
chr1 160710285 160716475 enh47245 160765864 49389
Thymus Blood (T-cell)
chr1 160711095 160711588 vista3619 160765864 54276
VISTA
chr1 160711781 160712159 vista3620 160765864 53705
VISTA
chr1 160712184 160712818 vista3621 160765864 53046
VISTA
chr1 160713171 160713322 vista3622 160765864 52542
VISTA
chr1 160714037 160714549 vista3623 160765864 51315
VISTA
chr1 160724725 160728875 enh107416 160765864 36989
Blood (T-cell)
chr1 160729809 160733959 enh61914 160765864 31905
Esophagus
chr1 160734905 160740446 enh58161 160765864 25418
Bone Marrow (K562) Skin (Keratinocyte) Esophagus Blood (GM12878) Blood (T-cell)
chr1 160736716 160737349 vista3624 160765864 28515
VISTA
chr1 160737478 160737714 vista3625 160765864 28150
VISTA
chr1 160745385 160754335 enh12322 160765864 11529
Skin (Keratinocyte) Prostate (PC-3) Large Intestine Blood (T-cell) Esophagus Blood (OCI-LY7) Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Thymus Epithelial (MCF-7)
chr1 160759511 160759977 vista3626 160765864 5887
VISTA
chr1 160760229 160760454 vista3627 160765864 5410
VISTA
chr1 160767340 160767450 vista3628 160765864 1476
VISTA
chr1 160767869 160768231 vista3629 160765864 2005
VISTA
chr1 160774025 160778175 enh107417 160765864 8161
Blood (T-cell)
chr1 160779065 160783215 enh103115 160765864 13201
Peripheral Blood (MM.1S)
chr1 160790939 160791134 vista3630 160765864 25075
VISTA
chr1 160802885 160807035 enh47246 160765864 37021
Thymus Blood (T-cell)
chr1 160807359 160807588 vista3631 160765864 41495
VISTA
chr1 160818865 160823015 enh49999 160765864 53001
Large Intestine
chr1 160823525 160830175 enh50000 160765864 57661
Blood (T-cell) Large Intestine Stomach
Transcript facotrs that regulate LY9[ENSG00000122224.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 160766437 160768874 ZNF274 GTRD no Blood (GM12878) 160765864 573 107840754
chr1 160766437 160768874 ZNF274 GTRD no Blood (GM12878) 160765864 573 107840755
chr1 160766543 160768958 ZNF274 GTRD no Blood (GM12878) 160765864 679 107840756
chr1 160766543 160768958 ZNF274 GTRD no Blood (GM12878) 160765864 679 107840757
chr1 160766619 160768884 ZNF274 GTRD no Blood (GM12878) 160765864 755 107840758
chr1 160766619 160768884 ZNF274 GTRD no Blood (GM12878) 160765864 755 107840759
chr1 160766669 160768950 ZNF274 GTRD no Blood (GM12878) 160765864 805 107840760
chr1 160766669 160768950 ZNF274 GTRD no Blood (GM12878) 160765864 805 107840761
chr1 160766675 160768807 ZNF274 GTRD no Blood (GM12878) 160765864 811 107840762
chr1 160766675 160768807 ZNF274 GTRD no Blood (GM12878) 160765864 811 107840763
chr1 160766745 160768828 ZNF274 GTRD no Blood (GM12878) 160765864 881 107840764
chr1 160766745 160768828 ZNF274 GTRD no Blood (GM12878) 160765864 881 107840765
chr1 160766751 160768837 ZNF274 GTRD no Blood (GM12878) 160765864 887 107840766
chr1 160766751 160768837 ZNF274 GTRD no Blood (GM12878) 160765864 887 107840767
chr1 160766832 160768778 ZNF274 GTRD no Blood (GM12878) 160765864 968 107840768
chr1 160766832 160768778 ZNF274 GTRD no Blood (GM12878) 160765864 968 107840769
chr1 160766837 160768837 ZNF274 GTRD no Blood (GM12878) 160765864 973 107840770
chr1 160766837 160768837 ZNF274 GTRD no Blood (GM12878) 160765864 973 107840771
chr1 160766840 160769294 ZNF274 GTRD no Blood (GM12878) 160765864 976 107840772
chr1 160766840 160769294 ZNF274 GTRD no Blood (GM12878) 160765864 976 107840773
chr1 160766864 160768798 ZNF274 GTRD no Bone Marrow (K562) 160765864 1000 107840774
chr1 160766864 160768798 ZNF274 GTRD no Bone Marrow (K562) 160765864 1000 107840775
chr1 160766929 160768835 ZNF274 GTRD no Blood (GM12878) 160765864 1065 107840776
chr1 160766929 160768835 ZNF274 GTRD no Blood (GM12878) 160765864 1065 107840777
chr1 160766937 160768893 ZNF274 GTRD no Blood (GM12878) 160765864 1073 107840778
chr1 160766937 160768893 ZNF274 GTRD no Blood (GM12878) 160765864 1073 107840779
chr1 160767117 160767527 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1253 107840780
chr1 160767121 160768842 ZNF274 GTRD no Blood (GM12878) 160765864 1257 107840781
chr1 160767121 160768842 ZNF274 GTRD no Blood (GM12878) 160765864 1257 107840782
chr1 160767125 160768774 ZNF274 GTRD no Blood (GM12878) 160765864 1261 107840783
chr1 160767125 160768774 ZNF274 GTRD no Blood (GM12878) 160765864 1261 107840784
chr1 160767126 160767646 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1262 107840785
chr1 160767126 160768755 ZNF274 GTRD no Blood (GM12878) 160765864 1262 107840786
chr1 160767126 160768755 ZNF274 GTRD no Blood (GM12878) 160765864 1262 107840787
chr1 160767136 160767516 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1272 107840788
chr1 160767151 160767899 ZNF274 GTRD no Bone Marrow (K562) 160765864 1287 107840789
chr1 160767151 160767899 ZNF274 GTRD no Bone Marrow (K562) 160765864 1287 107840790
chr1 160767153 160767673 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1289 107840791
chr1 160767224 160767533 RUNX3 UCSC Txn Factor no Conserved 160765864 1360 107840792
chr1 160767224 160767533 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1360 107840793
chr1 160767235 160767615 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1371 107840794
chr1 160767235 160768432 P63 GTRD no Skin (Keratinocyte) 160765864 1371 107840795
chr1 160767235 160768432 P63 GTRD no Skin (Keratinocyte) 160765864 1371 107840796
chr1 160767237 160767547 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1373 107840797
chr1 160767245 160767353 TCF7L2 GTRD no Colon (HCT116) 160765864 1381 107840798
chr1 160767270 160767534 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1406 107840799
chr1 160767272 160768749 ZNF274 GTRD no Blood (GM12878) 160765864 1408 107840800
chr1 160767272 160768749 ZNF274 GTRD no Blood (GM12878) 160765864 1408 107840801
chr1 160767295 160768804 ZNF274 GTRD no Bone Marrow (K562) 160765864 1431 107840802
chr1 160767295 160768804 ZNF274 GTRD no Bone Marrow (K562) 160765864 1431 107840803
chr1 160767319 160767609 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1455 107840804
chr1 160767340 160767350 CUX1 JASPAR yes 160765864 1476 118386134
chr1 160767376 160768844 P63 GTRD no Skin (Keratinocyte) 160765864 1512 107840805
chr1 160767376 160768844 P63 GTRD no Skin (Keratinocyte) 160765864 1512 107840806
chr1 160767378 160767531 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1514 107840807
chr1 160767392 160767411 PAX5 JASPAR yes 160765864 1528 118386135
chr1 160767393 160767512 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 160765864 1529 107840808
chr1 160767402 160767411 VENTX JASPAR yes 160765864 1538 118386136
chr1 160767404 160767419 ESR2 JASPAR yes 160765864 1540 118386137
chr1 160767413 160767421 CREB1 JASPAR yes 160765864 1549 118386138
chr1 160767413 160767423 RORA JASPAR yes 160765864 1549 118386139
chr1 160767448 160768715 P63 GTRD no Skin (Keratinocyte) 160765864 1584 107840809
chr1 160767448 160768715 P63 GTRD no Skin (Keratinocyte) 160765864 1584 107840810
chr1 160767463 160768412 P63 GTRD no Skin (Keratinocyte) 160765864 1599 107840811
chr1 160767465 160768683 ZNF274 GTRD no Blood (GM12878) 160765864 1601 107840812
chr1 160767526 160768284 ZNF274 GTRD no Bone Marrow (K562) 160765864 1662 107840813
chr1 160767526 160768791 ZNF274 GTRD no Blood (GM12878) 160765864 1662 107840814
chr1 160767527 160768688 ZNF274 GTRD no Blood (GM12878) 160765864 1663 107840815
chr1 160767529 160768760 ZNF274 GTRD no Blood (GM12878) 160765864 1665 107840816
chr1 160767533 160768753 ZNF274 GTRD no Blood (GM12878) 160765864 1669 107840817
chr1 160767575 160768338 ZNF274 GTRD no Bone Marrow (K562) 160765864 1711 107840818
chr1 160767575 160768356 ZNF274 GTRD no Bone Marrow (K562) 160765864 1711 107840819
chr1 160767578 160768797 ZNF274 GTRD no Bone Marrow (K562) 160765864 1714 107840820
chr1 160767580 160768405 ZNF274 GTRD no Blood (GM12878) 160765864 1716 107840821
chr1 160767582 160768842 ZNF274 GTRD no Blood (GM12878) 160765864 1718 107840822
chr1 160767623 160768835 ZNF274 GTRD no Blood (GM12878) 160765864 1759 107840823
chr1 160767634 160768183 ZNF274 GTRD no Blood (GM12878) 160765864 1770 107840824
chr1 160767634 160768893 ZNF274 GTRD no Bone Marrow (K562) 160765864 1770 107840825
chr1 160767635 160768731 ZNF274 GTRD no Blood (GM12878) 160765864 1771 107840826
chr1 160767638 160768318 ZNF274 GTRD no Blood (GM12878) 160765864 1774 107840827
chr1 160767639 160768212 ZNF274 GTRD no Blood (GM12878) 160765864 1775 107840828
chr1 160767645 160768193 ZNF274 GTRD no Blood (GM12878) 160765864 1781 107840829
chr1 160767648 160768339 ZNF274 GTRD no Blood (GM12878) 160765864 1784 107840830
chr1 160767651 160768775 ZBTB33 GTRD no Lung (A549) 160765864 1787 107840831
chr1 160767652 160768791 ZNF274 GTRD no Blood (GM12878) 160765864 1788 107840832
chr1 160767666 160768327 ZNF143 GTRD no Epithelial (MCF-7) 160765864 1802 107840833
chr1 160767667 160768679 ZNF274 GTRD no Blood (GM12878) 160765864 1803 107840834
chr1 160767670 160768255 ZNF274 GTRD no Blood (GM12878) 160765864 1806 107840835
chr1 160767687 160768279 ZNF274 GTRD no Blood (GM12878) 160765864 1823 107840836
chr1 160767688 160768118 ZNF143 GTRD no Epithelial (MCF-7) 160765864 1824 107840837
chr1 160767693 160768101 ZNF143 GTRD no Epithelial (MCF-7) 160765864 1829 107840838
chr1 160767699 160768273 ZNF143 GTRD no Epithelial (MCF-7) 160765864 1835 107840839
chr1 160767728 160768288 TCF7L2 GTRD no Colon (HCT116) 160765864 1864 107840840
chr1 160767731 160768130 ZNF274 GTRD no Blood (GM12878) 160765864 1867 107840841
chr1 160767843 160769039 ZNF274 GTRD no Bone Marrow (K562) 160765864 1979 107840842
chr1 160767885 160767889 NFE TRANSFAC yes 160765864 2021 118386140
chr1 160767918 160767929 FLI1 JASPAR yes 160765864 2054 118386141
chr1 160767925 160767931 NFE2 TRANSFAC yes 160765864 2061 118386142
chr1 160767925 160768852 ZBTB33 GTRD no Lung (A549) 160765864 2061 107840843
chr1 160767928 160767938 ZNF740 JASPAR yes 160765864 2064 118386143
chr1 160767929 160767935 SP1 TRANSFAC yes 160765864 2065 118386144
chr1 160767929 160768694 ZNF274 GTRD no Liver (HepG2) 160765864 2065 107840844
chr1 160767948 160769056 ZNF274 GTRD no Blood (GM12878) 160765864 2084 107840845
chr1 160767954 160767960 TCF4 TRANSFAC yes 160765864 2090 118386145
chr1 160767954 160767969 FOXP1 JASPAR yes 160765864 2090 118386146
chr1 160767955 160767969 FOXF2 JASPAR yes 160765864 2091 118386147
chr1 160767956 160767964 FOXG1 JASPAR yes 160765864 2092 118386148
chr1 160767956 160767964 FOXO3 JASPAR yes 160765864 2092 118386149
chr1 160767958 160767969 CDX2 JASPAR yes 160765864 2094 118386150
chr1 160767962 160768652 ZNF274 GTRD no Blood (GM12878) 160765864 2098 107840846
chr1 160767971 160767984 ATF4 JASPAR yes 160765864 2107 118386151
chr1 160767974 160767985 NFIL3 JASPAR yes 160765864 2110 118386152
chr1 160767979 160768922 ZNF143 GTRD no Epithelial (MCF-7) 160765864 2115 107840847
chr1 160767987 160768817 ZBTB33 GTRD no Lung (A549) 160765864 2123 107840848
chr1 160768005 160769033 ZNF143 GTRD no Epithelial (MCF-7) 160765864 2141 107840849
chr1 160768029 160768775 ZNF274 GTRD no Cervix (HeLa-S3) 160765864 2165 107840850
chr1 160768038 160768960 CTCF GTRD no Spleen 160765864 2174 107840851
chr1 160768046 160768051 GATA2 JASPAR yes 160765864 2182 118386153
chr1 160768056 160768060 LFA1 TRANSFAC yes 160765864 2192 118386154
chr1 160768081 160768940 ZNF274 GTRD no Bone Marrow (K562) 160765864 2217 107840852
chr1 160768083 160768099 ZNF143 JASPAR yes 160765864 2219 118386155
chr1 160768083 160769032 ZNF274 GTRD no Blood (GM12878) 160765864 2219 107840853
chr1 160768085 160768089 LFA1 TRANSFAC yes 160765864 2221 118386156
chr1 160768105 160768120 HNF4A JASPAR yes 160765864 2241 118386157
chr1 160768136 160768823 ZBTB33 GTRD no Lung (A549) 160765864 2272 107840854
chr1 160768139 160768144 ETS2 TRANSFAC yes 160765864 2275 118386158
chr1 160768143 160768154 FOXH1 JASPAR yes 160765864 2279 118386159
chr1 160768144 160768150 ZNF354C JASPAR yes 160765864 2280 118386160
chr1 160768145 160768153 RHOXF1 JASPAR yes 160765864 2281 118386161
chr1 160768146 160768744 ZNF274 GTRD no Blood (GM12878) 160765864 2282 107840855
chr1 160768162 160768904 ZNF274 GTRD no Liver (HepG2) 160765864 2298 107840856
chr1 160768181 160768197 E2F2 JASPAR yes 160765864 2317 118386162
chr1 160768185 160768656 ZNF274 GTRD no Blood (GM12878) 160765864 2321 107840857
chr1 160768187 160768202 MEF2A JASPAR yes 160765864 2323 118386163
chr1 160768188 160768198 POU6F2 JASPAR yes 160765864 2324 118386164
chr1 160768188 160768203 MEF2A JASPAR yes 160765864 2324 118386165
chr1 160768188 160768203 MEF2C JASPAR yes 160765864 2324 118386166
chr1 160768189 160768199 EMX2 JASPAR yes 160765864 2325 118386167
chr1 160768189 160768199 EVX1 JASPAR yes 160765864 2325 118386168
chr1 160768189 160768199 EVX2 JASPAR yes 160765864 2325 118386169
chr1 160768189 160768199 HESX1 JASPAR yes 160765864 2325 118386170
chr1 160768189 160768199 HOXA2 JASPAR yes 160765864 2325 118386171
chr1 160768189 160768199 HOXB2 JASPAR yes 160765864 2325 118386172
chr1 160768189 160768199 LHX2 JASPAR yes 160765864 2325 118386173
chr1 160768189 160768199 MEOX1 JASPAR yes 160765864 2325 118386174
chr1 160768189 160768199 MEOX2 JASPAR yes 160765864 2325 118386175
chr1 160768189 160768199 MNX1 JASPAR yes 160765864 2325 118386176
chr1 160768189 160768201 MEF2A JASPAR yes 160765864 2325 118386177
chr1 160768189 160768201 MEF2B JASPAR yes 160765864 2325 118386178
chr1 160768189 160768201 MEF2D JASPAR yes 160765864 2325 118386179
chr1 160768190 160768198 LBX1 JASPAR yes 160765864 2326 118386180
chr1 160768190 160768198 PDX1 JASPAR yes 160765864 2326 118386181
chr1 160768190 160768198 VAX1 JASPAR yes 160765864 2326 118386182
chr1 160768190 160768198 VAX2 JASPAR yes 160765864 2326 118386183
chr1 160768190 160768198 VSX1 JASPAR yes 160765864 2326 118386184
chr1 160768190 160768198 VSX2 JASPAR yes 160765864 2326 118386185
chr1 160768190 160768200 MEF2A JASPAR yes 160765864 2326 118386186
chr1 160768190 160768682 ZNF274 GTRD no Bone Marrow (K562) 160765864 2326 107840858
chr1 160768192 160768748 ZNF274 GTRD no Bone Marrow (K562) 160765864 2328 107840859
chr1 160768196 160768595 ZNF274 GTRD no Blood (GM12878) 160765864 2332 107840860
chr1 160768199 160768829 ZNF274 GTRD no Blood (GM12878) 160765864 2335 107840861
chr1 160768199 160768832 ZNF143 GTRD no Epithelial (MCF-7) 160765864 2335 107840862
chr1 160768214 160768229 JUND JASPAR yes 160765864 2350 118386187
chr1 160768218 160768730 ZNF143 GTRD no Epithelial (MCF-7) 160765864 2354 107840863
chr1 160768224 160768804 ZNF274 GTRD no Blood (GM12878) 160765864 2360 107840864
SNPs associated with LY9[ENSG00000122224.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 159924257 rs3806199 G A 841607 Esophagus 0.35642 662883
chr1 159895017 rs5778138 TCTATG T 870847 Pancreas 0.156243 662680
chr1 161741486 rs6658423 T C 943435 Uterus 0.397865 673347
Details of LY9[ENSG00000122224.13]
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Genomic Location chr1:160765864-160798051[+]
TSS 160765864
Gene Name LY9
Ensembl ID ENSG00000122224.13
ENTREZID 4063
Uniprot
Q5VYH9
Q0VAI0
Q05CA2
Q9HBG7
A0A0C4DFU4
Protein Name
LY9 protein
Lymphocyte antigen 9
T-lymphocyte surface antigen Ly-9
Expression levels of LY9[ENSG00000122224.13]
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