EnhancerDB
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Enhancers that regulate VPS13C[ENSG00000129003.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 62284437 62288761 enh31434 62352672 63911
Muscle (Myoblast) Astrocyte
chr15 62337605 62341815 enh3627 62352672 10857
Peripheral Blood (MM.1S) Blood (Karpas-422) Stomach
chr15 62365845 62370490 enh44128 62352672 13173
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Stomach Muscle (Myoblast) Muscle (Myotube) Epithelial (MCF-7)
chr15 62373505 62384035 enh52036 62352672 20833
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Esophagus Muscle (A673) Pancreas Stomach
chr15 62389465 62393795 enh81008 62352672 36793
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7)
chr15 62394745 62423415 enh31435 62352672 42073
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr15 62402832 62402995 vista20229 62352672 50160
VISTA
chr15 62405210 62405473 vista20230 62352672 52538
VISTA
chr15 62410713 62410981 vista20231 62352672 58041
VISTA
chr15 62411576 62411892 vista20232 62352672 58904
VISTA
chr15 62416318 62416522 vista20233 62352672 63646
VISTA
chr15 62416624 62416992 vista20234 62352672 63952
VISTA
chr15 62426005 62444935 enh31436 62352672 73333
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Muscle (A673) Peripheral Blood (MM.1S) Pancreas Uterus Stomach
chr15 62430374 62430555 vista20235 62352672 77702
VISTA
Transcript facotrs that regulate VPS13C[ENSG00000129003.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with VPS13C[ENSG00000129003.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 61406100 rs782927 T C 738488 Esophagus 0.137893 4005125
chr15 62841858 rs72753895 T A 489186 Pancreas 0.323729 4011846
chr15 62352843 rs11630347 C A,G,T 171 Ovary 0.158578 4008118
chr15 62125859 rs8026735 C T 18729 Liver 0.0557948 4007913
Details of VPS13C[ENSG00000129003.11]
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Genomic Location chr15:62144588-62352672[-]
TSS 62352672
Gene Name VPS13C
Ensembl ID ENSG00000129003.11
ENTREZID 54832
Uniprot
Q709C8
Protein Name
Vacuolar protein sorting-associated protein 13C
Expression levels of VPS13C[ENSG00000129003.11]
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