EnhancerDB
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Enhancers that regulate MBD4[ENSG00000129071.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 129060132 129067823 enh20927 129158878 91055
Placenta Colon (HCT116) Brain (SK-N-SH) Heart
chr3 129070114 129074264 enh65752 129158878 84614
Heart
chr3 129074966 129080366 enh115805 129158878 78512
Brain (SK-N-SH)
chr3 129095885 129119955 enh7528 129158878 38923
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Brain (SK-N-SH) Astrocyte Bone (Osteoblast) Colon (HCT116) Thyroid Pancreas (Panc1) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Uterus Heart
chr3 129129825 129136975 enh35867 129158878 21903
Astrocyte Liver (HepG2)
chr3 129140665 129146375 enh7529 129158878 12503
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Liver Blood (OCI-LY7) Blood (Karpas-422) Pancreas Spleen
chr3 129161185 129168235 enh70840 129158878 2307
Pancreas Neural Stem Cells (H9)
chr3 129167159 129167354 vista42405 129158878 8281
VISTA
chr3 129180710 129180864 vista42406 129158878 21832
VISTA
chr3 129189985 129194135 enh93205 129158878 31107
Liver (HepG2)
chr3 129198965 129207495 enh20928 129158878 40087
Prostate (RWPE1) Astrocyte Placenta Uterus Neural Stem Cells (H9)
chr3 129204579 129204997 vista42407 129158878 45701
VISTA
chr3 129208027 129224155 enh65753 129158878 49149
Liver (HepG2) Bone (Osteoblast) Epithelial (MCF-7) Heart
chr3 129244298 129244494 vista42408 129158878 85420
VISTA
chr3 129245035 129245230 vista42409 129158878 86157
VISTA
chr3 129245456 129245718 vista42410 129158878 86578
VISTA
Transcript facotrs that regulate MBD4[ENSG00000129071.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 129162353 129162365 TAL1 JASPAR yes 129158878 3475 5660578
chr3 129162389 129162393 H1TF2 TRANSFAC yes 129158878 3511 5660579
chr3 129162389 129162393 NFE TRANSFAC yes 129158878 3511 5660580
chr3 129162389 129162393 SRF TRANSFAC yes 129158878 3511 5660581
chr3 129162404 129162418 BATF3 JASPAR yes 129158878 3526 5660582
chr3 129162408 129162413 H4TF1 TRANSFAC yes 129158878 3530 5660583
chr3 129162408 129162419 CEBPB JASPAR yes 129158878 3530 5660584
chr3 129162408 129162420 HLF JASPAR yes 129158878 3530 5660585
chr3 129162409 129162420 CEBPA JASPAR yes 129158878 3531 5660586
chr3 129162415 129162426 PHOX2A JASPAR yes 129158878 3537 5660587
chr3 129162415 129162426 PROP1 JASPAR yes 129158878 3537 5660588
chr3 129162418 129162430 FOXI1 JASPAR yes 129158878 3540 5660589
chr3 129162421 129162425 YY1 TRANSFAC yes 129158878 3543 5660590
chr3 129162421 129162432 HOXA10 JASPAR yes 129158878 3543 5660591
chr3 129162422 129162431 CDX1 JASPAR yes 129158878 3544 5660592
chr3 129162422 129162433 CDX2 JASPAR yes 129158878 3544 5660593
chr3 129162446 129162462 ZNF143 JASPAR yes 129158878 3568 5660594
chr3 129162458 129162462 H4TF2 TRANSFAC yes 129158878 3580 5660595
chr3 129162474 129162490 SOX4 JASPAR yes 129158878 3596 5660596
chr3 129162475 129162490 SOX21 JASPAR yes 129158878 3597 5660597
chr3 129162475 129162491 SOX4 JASPAR yes 129158878 3597 5660598
chr3 129162505 129162517 MEF2A JASPAR yes 129158878 3627 5660599
chr3 129162505 129162517 MEF2B JASPAR yes 129158878 3627 5660600
chr3 129162505 129162517 MEF2D JASPAR yes 129158878 3627 5660601
chr3 129162506 129162516 MEF2A JASPAR yes 129158878 3628 5660602
chr3 129162507 129162511 TEAD2 TRANSFAC yes 129158878 3629 5660603
chr3 129162507 129162517 ALX3 JASPAR yes 129158878 3629 5660604
chr3 129162507 129162517 GSX2 JASPAR yes 129158878 3629 5660605
chr3 129162507 129162517 MNX1 JASPAR yes 129158878 3629 5660606
chr3 129162508 129162516 LMX1A JASPAR yes 129158878 3630 5660607
chr3 129162508 129162516 LMX1B JASPAR yes 129158878 3630 5660608
chr3 129162508 129162516 NKX6-1 JASPAR yes 129158878 3630 5660609
chr3 129162508 129162516 NKX6-2 JASPAR yes 129158878 3630 5660610
chr3 129162508 129162516 VAX1 JASPAR yes 129158878 3630 5660611
chr3 129162508 129162516 VAX2 JASPAR yes 129158878 3630 5660612
chr3 129162508 129162516 VSX1 JASPAR yes 129158878 3630 5660613
chr3 129162508 129162516 VSX2 JASPAR yes 129158878 3630 5660614
chr3 129162518 129162522 LFA1 TRANSFAC yes 129158878 3640 5660615
chr3 129162538 129162541 MYB TRANSFAC yes 129158878 3660 5660616
chr3 129162542 129162557 FOXP1 JASPAR yes 129158878 3664 5660617
chr3 129162560 129162564 TEAD2 TRANSFAC yes 129158878 3682 5660618
chr3 129162571 129162585 IRF7 JASPAR yes 129158878 3693 5660619
chr3 129162594 129162601 NKX3-1 JASPAR yes 129158878 3716 5660620
chr3 129162594 129162605 PROP1 JASPAR yes 129158878 3716 5660621
chr3 129162595 129162610 AR JASPAR yes 129158878 3717 5660622
chr3 129162600 129162604 YY1 TRANSFAC yes 129158878 3722 5660623
chr3 129162613 129162618 NFY TRANSFAC yes 129158878 3735 5660624
chr3 129162618 129162622 LFA1 TRANSFAC yes 129158878 3740 5660625
chr3 129162637 129162652 MEF2A JASPAR yes 129158878 3759 5660626
chr3 129162641 129162645 YY1 TRANSFAC yes 129158878 3763 5660627
chr3 129162646 129162654 EHF JASPAR yes 129158878 3768 5660628
chr3 129162648 129162663 HNF4G JASPAR yes 129158878 3770 5660629
chr3 129162672 129162686 IRF7 JASPAR yes 129158878 3794 5660630
chr3 129162691 129162705 SPIC JASPAR yes 129158878 3813 5660631
chr3 129162695 129162702 SPIB JASPAR yes 129158878 3817 5660632
chr3 129162697 129162709 TEAD1 JASPAR yes 129158878 3819 5660633
chr3 129162698 129162718 TP53 JASPAR yes 129158878 3820 5660634
chr3 129162700 129162716 SOX8 JASPAR yes 129158878 3822 5660635
chr3 129162702 129162717 TP53 JASPAR yes 129158878 3824 5660636
chr3 129162722 129162733 NFE2 JASPAR yes 129158878 3844 5660637
chr3 129162723 129162732 JDP2 JASPAR yes 129158878 3845 5660638
chr3 129162734 129162740 HiNF-A TRANSFAC yes 129158878 3856 5660639
chr3 129162754 129162771 RARA JASPAR yes 129158878 3876 5660640
chr3 129162754 129162771 RXRA JASPAR yes 129158878 3876 5660641
chr3 129162765 129162775 RORA JASPAR yes 129158878 3887 5660642
chr3 129162779 129162792 NR2F1 JASPAR yes 129158878 3901 5660643
chr3 129162781 129162789 NR4A2 JASPAR yes 129158878 3903 5660644
chr3 129162782 129162797 ESR2 JASPAR yes 129158878 3904 5660645
chr3 129162782 129162799 RARA JASPAR yes 129158878 3904 5660646
chr3 129162783 129162787 ESR1 TRANSFAC yes 129158878 3905 5660647
chr3 129162784 129162796 HNF1B JASPAR yes 129158878 3906 5660648
chr3 129162796 129162810 TCF7L2 JASPAR yes 129158878 3918 5660649
chr3 129162799 129162805 LEF1 TRANSFAC yes 129158878 3921 5660650
chr3 129162799 129162805 TCF4 TRANSFAC yes 129158878 3921 5660651
chr3 129162800 129162815 JUND JASPAR yes 129158878 3922 5660652
chr3 129162801 129162814 JUN JASPAR yes 129158878 3923 5660653
chr3 129162803 129162818 JUND JASPAR yes 129158878 3925 5660654
chr3 129162804 129162817 JUN JASPAR yes 129158878 3926 5660655
chr3 129162805 129162812 JUN TRANSFAC yes 129158878 3927 5660656
chr3 129162830 129162835 ETS2 TRANSFAC yes 129158878 3952 5660657
chr3 129162833 129162848 RUNX2 JASPAR yes 129158878 3955 5660658
chr3 129162838 129162848 TEAD1 JASPAR yes 129158878 3960 5660659
chr3 129162891 129162899 RHOXF1 JASPAR yes 129158878 4013 5660660
chr3 129162894 129162900 ZNF354C JASPAR yes 129158878 4016 5660661
chr3 129162903 129162914 FOXH1 JASPAR yes 129158878 4025 5660662
chr3 129162906 129162919 SCRT2 JASPAR yes 129158878 4028 5660663
chr3 129162906 129162921 SCRT1 JASPAR yes 129158878 4028 5660664
chr3 129162907 129162913 ZNF354C JASPAR yes 129158878 4029 5660665
chr3 129162929 129162934 GATA2 JASPAR yes 129158878 4051 5660666
chr3 129162972 129162976 NFE TRANSFAC yes 129158878 4094 5660667
chr3 129162973 129162978 GATA2 JASPAR yes 129158878 4095 5660668
chr3 129162986 129162996 TBX21 JASPAR yes 129158878 4108 5660669
chr3 129162986 129162997 TBX2 JASPAR yes 129158878 4108 5660670
chr3 129162986 129163007 IRF1 JASPAR yes 129158878 4108 5660671
chr3 129162987 129162997 TBR1 JASPAR yes 129158878 4109 5660672
chr3 129162990 129163005 PRDM1 JASPAR yes 129158878 4112 5660673
chr3 129162995 129163001 TCF4 TRANSFAC yes 129158878 4117 5660674
chr3 129163005 129163011 GATA3 JASPAR yes 129158878 4127 5660675
chr3 129163020 129163041 ZNF263 JASPAR yes 129158878 4142 5660676
chr3 129163035 129163045 MZF1 JASPAR yes 129158878 4157 5660677
chr3 129163052 129163064 YY1 JASPAR yes 129158878 4174 5660678
chr3 129163076 129163088 TGIF2 JASPAR yes 129158878 4198 5660679
chr3 129163081 129163090 NFIX JASPAR yes 129158878 4203 5660680
chr3 129163081 129163091 NFIA JASPAR yes 129158878 4203 5660681
chr3 129163083 129163089 NFIC JASPAR yes 129158878 4205 5660682
chr3 129163094 129163101 SPIB JASPAR yes 129158878 4216 5660683
chr3 129163094 129163115 ZNF263 JASPAR yes 129158878 4216 5660684
chr3 129163099 129163113 IRF7 JASPAR yes 129158878 4221 5660685
chr3 129163100 129163114 SPIC JASPAR yes 129158878 4222 5660686
chr3 129163116 129163121 ETS2 TRANSFAC yes 129158878 4238 5660687
chr3 129163116 129163124 EHF JASPAR yes 129158878 4238 5660688
chr3 129163134 129163145 RUNX1 JASPAR yes 129158878 4256 5660689
chr3 129163192 129163205 EOMES JASPAR yes 129158878 4314 5660690
chr3 129163236 129163251 RFX5 JASPAR yes 129158878 4358 5660691
chr3 129163275 129163293 NFYA JASPAR yes 129158878 4397 5660692
chr3 129163281 129163296 NFYB JASPAR yes 129158878 4403 5660693
chr3 129163295 129163314 PAX5 JASPAR yes 129158878 4417 5660694
chr3 129163297 129163301 LFA1 TRANSFAC yes 129158878 4419 5660695
chr3 129163309 129163313 NFE TRANSFAC yes 129158878 4431 5660696
chr3 129163314 129163318 NFE TRANSFAC yes 129158878 4436 5660697
chr3 129163318 129163336 NR3C1 JASPAR yes 129158878 4440 5660698
chr3 129163324 129163328 YY1 TRANSFAC yes 129158878 4446 5660699
chr3 129163327 129163339 FOXC2 JASPAR yes 129158878 4449 5660700
chr3 129163328 129163339 FOXC1 JASPAR yes 129158878 4450 5660701
chr3 129163361 129163382 IRF1 JASPAR yes 129158878 4483 5660702
chr3 129163363 129163384 IRF1 JASPAR yes 129158878 4485 5660703
chr3 129163368 129163383 FOXP1 JASPAR yes 129158878 4490 5660704
chr3 129163370 129163385 FOXP1 JASPAR yes 129158878 4492 5660705
chr3 129163371 129163386 FOXP1 JASPAR yes 129158878 4493 5660706
chr3 129163396 129163415 RFX2 JASPAR yes 129158878 4518 5660707
chr3 129163398 129163413 RFX5 JASPAR yes 129158878 4520 5660708
chr3 129163419 129163428 NF-IL6 TRANSFAC yes 129158878 4541 5660709
chr3 129163420 129163430 CEBPB JASPAR yes 129158878 4542 5660710
chr3 129163420 129163430 CEBPD JASPAR yes 129158878 4542 5660711
chr3 129163420 129163430 CEBPE JASPAR yes 129158878 4542 5660712
chr3 129163420 129163430 CEBPG JASPAR yes 129158878 4542 5660713
chr3 129163420 129163431 CEBPB JASPAR yes 129158878 4542 5660714
chr3 129163445 129163454 SP1 TRANSFAC yes 129158878 4567 5660715
chr3 129163446 129163454 SP1 TRANSFAC yes 129158878 4568 5660716
chr3 129163446 129163456 SP1 JASPAR yes 129158878 4568 5660717
chr3 129163467 129163488 ZNF263 JASPAR yes 129158878 4589 5660718
chr3 129163493 129163501 TBX15 JASPAR yes 129158878 4615 5660719
chr3 129163494 129163499 SP1 TRANSFAC yes 129158878 4616 5660720
chr3 129163498 129163513 SCRT1 JASPAR yes 129158878 4620 5660721
chr3 129163502 129163511 SNAI2 JASPAR yes 129158878 4624 5660722
chr3 129163502 129163512 FIGLA JASPAR yes 129158878 4624 5660723
chr3 129163502 129163512 ID4 JASPAR yes 129158878 4624 5660724
chr3 129163502 129163512 TCF3 JASPAR yes 129158878 4624 5660725
chr3 129163502 129163512 TCF4 JASPAR yes 129158878 4624 5660726
chr3 129163504 129163513 ZEB1 JASPAR yes 129158878 4626 5660727
chr3 129163510 129163531 REST JASPAR yes 129158878 4632 5660728
chr3 129163511 129163530 REST JASPAR yes 129158878 4633 5660729
chr3 129163516 129163526 SP1 JASPAR yes 129158878 4638 5660730
chr3 129163519 129163524 SP1 TRANSFAC yes 129158878 4641 5660731
chr3 129163533 129163548 MEF2A JASPAR yes 129158878 4655 5660732
chr3 129163534 129163549 MEF2C JASPAR yes 129158878 4656 5660733
chr3 129163535 129163547 MEF2A JASPAR yes 129158878 4657 5660734
chr3 129163535 129163547 MEF2B JASPAR yes 129158878 4657 5660735
chr3 129163535 129163547 MEF2D JASPAR yes 129158878 4657 5660736
chr3 129163537 129163541 YY1 TRANSFAC yes 129158878 4659 5660737
chr3 129163555 129163566 CEBPB JASPAR yes 129158878 4677 5660738
chr3 129163558 129163570 YY1 JASPAR yes 129158878 4680 5660739
chr3 129163587 129163600 NR2F1 JASPAR yes 129158878 4709 5660740
chr3 129163614 129163628 GLIS3 JASPAR yes 129158878 4736 5660741
chr3 129163642 129163653 FOSL2 JASPAR yes 129158878 4764 5660742
chr3 129163649 129163667 TP53 JASPAR yes 129158878 4771 5660743
chr3 129163649 129163667 TP73 JASPAR yes 129158878 4771 5660744
chr3 129163671 129163687 POU4F2 JASPAR yes 129158878 4793 5660745
chr3 129163674 129163683 SRY JASPAR yes 129158878 4796 5660746
chr3 129163676 129163679 MYB TRANSFAC yes 129158878 4798 5660747
chr3 129163684 129163696 HNF1B JASPAR yes 129158878 4806 5660748
chr3 129163685 129163699 POU4F1 JASPAR yes 129158878 4807 5660749
chr3 129163685 129163701 POU4F3 JASPAR yes 129158878 4807 5660750
chr3 129163691 129163696 MYB TRANSFAC yes 129158878 4813 5660751
chr3 129163697 129163700 MYB TRANSFAC yes 129158878 4819 5660752
chr3 129163710 129163720 HOXD13 JASPAR yes 129158878 4832 5660753
chr3 129163710 129163721 HOXA10 JASPAR yes 129158878 4832 5660754
chr3 129163719 129163724 ETS2 TRANSFAC yes 129158878 4841 5660755
chr3 129163728 129163746 ESR1 JASPAR yes 129158878 4850 5660756
chr3 129163731 129163735 ESR1 TRANSFAC yes 129158878 4853 5660757
chr3 129163758 129163772 POU4F1 JASPAR yes 129158878 4880 5660758
chr3 129163758 129163774 POU4F3 JASPAR yes 129158878 4880 5660759
chr3 129163778 129163792 RORA JASPAR yes 129158878 4900 5660760
chr3 129163783 129163803 PPARG JASPAR yes 129158878 4905 5660761
chr3 129163804 129163816 BHLHE23 JASPAR yes 129158878 4926 5660762
chr3 129163804 129163816 PKNOX1 JASPAR yes 129158878 4926 5660763
chr3 129163804 129163816 PKNOX2 JASPAR yes 129158878 4926 5660764
chr3 129163804 129163816 TGIF1 JASPAR yes 129158878 4926 5660765
chr3 129163804 129163816 TGIF2 JASPAR yes 129158878 4926 5660766
chr3 129163805 129163815 BHLHE22 JASPAR yes 129158878 4927 5660767
chr3 129163805 129163815 NEUROD2 JASPAR yes 129158878 4927 5660768
chr3 129163805 129163815 NEUROG2 JASPAR yes 129158878 4927 5660769
chr3 129163805 129163815 OLIG1 JASPAR yes 129158878 4927 5660770
chr3 129163805 129163815 OLIG2 JASPAR yes 129158878 4927 5660771
chr3 129163805 129163815 OLIG3 JASPAR yes 129158878 4927 5660772
chr3 129163808 129163819 FOXA1 JASPAR yes 129158878 4930 5660773
chr3 129163808 129163823 FOXA1 JASPAR yes 129158878 4930 5660774
chr3 129163809 129163820 FOXC1 JASPAR yes 129158878 4931 5660775
chr3 129163809 129163821 FOXC2 JASPAR yes 129158878 4931 5660776
chr3 129163811 129163817 NFIC JASPAR yes 129158878 4933 5660777
chr3 129163815 129163830 SOX21 JASPAR yes 129158878 4937 5660778
chr3 129163855 129163870 TFAP2A JASPAR yes 129158878 4977 5660779
chr3 129163855 129163870 TFAP2C JASPAR yes 129158878 4977 5660780
chr3 129163856 129163870 TLX1 JASPAR yes 129158878 4978 5660781
SNPs associated with MBD4[ENSG00000129071.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 128211729 rs559062253 G A 938058 Esophagus 0.193742 7020263
chr3 129206796 rs9819604 G T 47918 Esophagus 0.214093 7026465
chr3 129602496 rs112121441 T C 443618 Heart 0.110847 7029194
chr3 129099972 rs113636864 C T 49815 Spleen 0.429952 7025659
chr3 128323509 rs114900607 G A 826278 Thyroid 0.209876 7021448
chr3 129033370 rs79158845 C T 116417 Lung 0.000461884 7025039
Details of MBD4[ENSG00000129071.5]
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Genomic Location chr3:129149787-129158878[-]
TSS 129158878
Gene Name MBD4
Ensembl ID ENSG00000129071.5
ENTREZID 8930
Uniprot
O95243
Protein Name
Methyl-CpG-binding domain protein 4
Expression levels of MBD4[ENSG00000129071.5]
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