EnhancerDB
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Enhancers that regulate SNRPA1[ENSG00000131876.12]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 101726845 101770455 enh16480 101835487 65032
Liver Astrocyte Colon (HCT116) Adrenal Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr15 101739961 101740273 vista21469 101835487 95214
VISTA
chr15 101741612 101741900 vista21470 101835487 93587
VISTA
chr15 101745424 101745566 vista21471 101835487 89921
VISTA
chr15 101746461 101746795 vista21472 101835487 88692
VISTA
chr15 101748030 101748406 vista21473 101835487 87081
VISTA
chr15 101770865 101775155 enh75739 101835487 60332
Muscle (A673) Thyroid Stomach
chr15 101777765 101782095 enh64927 101835487 53392
Heart Brain (SK-N-MC) Neural Stem Cells (H9) Blood (T-cell) Stomach
chr15 101782865 101790755 enh64928 101835487 44732
Liver (HepG2) Epithelial (MCF-7) Blood (GM12878) Heart
chr15 101783359 101783726 vista21474 101835487 51761
VISTA
chr15 101787304 101787467 vista21475 101835487 48020
VISTA
chr15 101790495 101790968 vista21476 101835487 44519
VISTA
chr15 101795882 101795956 vista21477 101835487 39531
VISTA
chr15 101802314 101810260 enh31658 101835487 25227
Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Peripheral Blood (MM.1S) Uterus Muscle (Myoblast) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr15 101805289 101805580 vista21478 101835487 29907
VISTA
chr15 101807515 101807673 vista21479 101835487 27814
VISTA
chr15 101818299 101818511 vista21480 101835487 16976
VISTA
chr15 101834172 101834455 vista21481 101835487 1032
VISTA
chr15 101860934 101861170 vista21482 101835487 25447
VISTA
chr15 101895010 101901395 enh58689 101835487 59523
Stomach Skin (Keratinocyte) Heart
Transcript facotrs that regulate SNRPA1[ENSG00000131876.12]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 101834205 101834210 SP1 TRANSFAC yes 101835487 1277 70597248
chr15 101834206 101834211 SP1 TRANSFAC yes 101835487 1276 70597249
chr15 101834209 101834214 SP1 TRANSFAC yes 101835487 1273 70597250
chr15 101834214 101834225 USF1 JASPAR yes 101835487 1262 70597251
chr15 101834214 101834225 USF2 JASPAR yes 101835487 1262 70597252
chr15 101834215 101834225 SREBF2 JASPAR yes 101835487 1262 70597253
chr15 101834217 101834222 USF2 TRANSFAC yes 101835487 1265 70597254
chr15 101834232 101834252 ESR1 JASPAR yes 101835487 1235 70597255
chr15 101834236 101834254 NR3C1 JASPAR yes 101835487 1233 70597256
chr15 101834242 101834552 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 101835487 935 108169556
chr15 101834250 101834262 YY1 JASPAR yes 101835487 1225 70597257
chr15 101834271 101834286 MEF2C JASPAR yes 101835487 1201 70597258
chr15 101834272 101834287 MEF2A JASPAR yes 101835487 1200 70597259
chr15 101834273 101834285 MEF2A JASPAR yes 101835487 1202 70597260
chr15 101834273 101834285 MEF2B JASPAR yes 101835487 1202 70597261
chr15 101834273 101834285 MEF2D JASPAR yes 101835487 1202 70597262
chr15 101834286 101834305 PAX5 JASPAR yes 101835487 1182 70597263
chr15 101834295 101834305 SP1 JASPAR yes 101835487 1182 70597264
chr15 101834296 101834316 TP63 JASPAR yes 101835487 1171 70597265
chr15 101834297 101834315 TP73 JASPAR yes 101835487 1172 70597266
chr15 101834299 101834699 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 101835487 788 108169557
chr15 101834300 101834560 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 101835487 927 108169558
chr15 101834354 101834359 USF2 TRANSFAC yes 101835487 1128 70597267
chr15 101834368 101834373 SP1 TRANSFAC yes 101835487 1114 70597268
chr15 101834392 101834402 SREBF1 JASPAR yes 101835487 1085 70597269
chr15 101834392 101834402 SREBF2 JASPAR yes 101835487 1085 70597270
chr15 101834415 101834420 SP1 TRANSFAC yes 101835487 1067 70597271
chr15 101834418 101834424 ETS1 JASPAR yes 101835487 1063 70597272
chr15 101834422 101834435 SMAD2 JASPAR yes 101835487 1052 70597273
SNPs associated with SNRPA1[ENSG00000131876.12], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 101314278 rs62021767 G A 507437 Esophagus 0.0458899 4235120
chr15 101811166 rs74041951 C T 10549 Esophagus 0.241334 4240335
chr15 101633891 rs117084067 C T 187824 Heart 0.111711 4237682
chr15 101658111 rs2034810 G A 163604 Heart 0.1454 4238028
chr15 101304110 rs149647428 G A 517605 Breast 0.278089 4234944
chr15 101076295 rs112270063 G A 745420 Spleen 0.340552 4232924
chr15 101684862 rs58296516 G A 136853 Uterus 0.011244 4238453
chr15 101738824 rs35400551 T C 82891 Liver 0.447651 4239328
chr15 101384173 rs75437922 G A 437542 Stomach 0.218972 4235523
Details of SNRPA1[ENSG00000131876.12]
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Genomic Location chr15:101821715-101835487[-]
TSS 101835487
Gene Name SNRPA1
Ensembl ID ENSG00000131876.12
ENTREZID 6627
Uniprot
P09661
Protein Name
isoform CRA_a
SNRPA1 protein
Small nuclear ribonucleoprotein polypeptide A'
U2 small nuclear ribonucleoprotein A'
Expression levels of SNRPA1[ENSG00000131876.12]
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