EnhancerDB
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Enhancers that regulate KLF4[ENSG00000136826.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr9 110146185 110170055 enh25849 110252763 82708
Prostate (PC-3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Stomach Placenta Breast Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Muscle (Myotube) Uterus Epithelial (MCF-7)
chr9 110172325 110177155 enh25850 110252763 75608
Placenta
chr9 110177007 110177340 vista62839 110252763 75423
VISTA
chr9 110182585 110190695 enh25851 110252763 62068
Placenta Uterus Prostate (RWPE1) Stomach
chr9 110188118 110188260 vista62840 110252763 64503
VISTA
chr9 110192765 110197275 enh25852 110252763 55488
Stomach Placenta Epithelial (MCF-7)
chr9 110198193 110204755 enh25853 110252763 48008
Cervix (HeLa-S3) Placenta Lung (PC-9) Neural Stem Cells (H9) Epithelial (MCF-7)
chr9 110204765 110212415 enh25854 110252763 40348
Esophagus Skin (Keratinocyte) Placenta Epithelial (MCF-7)
chr9 110215725 110219875 enh110494 110252763 32888
Stomach
chr9 110220165 110224915 enh25855 110252763 27848
Placenta Large Intestine
chr9 110227888 110228126 vista62841 110252763 24637
VISTA
chr9 110228422 110228558 vista62842 110252763 24205
VISTA
chr9 110231935 110236185 enh25856 110252763 16578
Placenta
chr9 110239231 110245815 enh25857 110252763 6948
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr9 110254619 110254916 vista62843 110252763 1856
VISTA
chr9 110264305 110273795 enh42160 110252763 11542
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Liver Bone (Osteoblast) Stomach Muscle (Myoblast) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
chr9 110266981 110267369 vista62844 110252763 14218
VISTA
chr9 110271317 110271411 vista62845 110252763 18554
VISTA
chr9 110273885 110282075 enh73775 110252763 21122
Prostate (PC-3) Neural Stem Cells (H9) Peripheral Blood (MM.1S)
chr9 110275711 110275985 vista62846 110252763 22948
VISTA
chr9 110283925 110293335 enh25858 110252763 31162
Placenta
chr9 110293705 110316815 enh25859 110252763 40942
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Esophagus Astrocyte Lung (A549) Stomach Muscle (A673) Placenta Pancreas (Panc1) Uterus Lung (PC-9) Breast Spleen Muscle (Myotube) Neural Stem Cells (H9) Heart
chr9 110310627 110311050 vista62847 110252763 57864
VISTA
chr9 110317691 110322389 enh25860 110252763 64928
Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Placenta Colon (HCT116)
chr9 110326801 110335555 enh46825 110252763 74038
Cervix (HeLa-S3) Liver Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Stomach
chr9 110337505 110341955 enh66711 110252763 84742
Uterus Heart
chr9 110346469 110353315 enh25861 110252763 93706
Large Intestine Bone (Osteoblast) Stomach Placenta Pancreas (Panc1) Uterus Heart
Transcript facotrs that regulate KLF4[ENSG00000136826.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr9 110254622 110254632 SP1 JASPAR yes 110252763 1859 95392461
chr9 110254625 110254635 MZF1 JASPAR yes 110252763 1862 95392462
chr9 110254633 110254648 STAT2 JASPAR yes 110252763 1870 95392463
chr9 110254644 110254648 NFE TRANSFAC yes 110252763 1881 95392464
chr9 110254644 110254649 GATA1 TRANSFAC yes 110252763 1881 95392465
chr9 110254644 110254650 GATA3 JASPAR yes 110252763 1881 95392466
chr9 110254651 110254654 MYB TRANSFAC yes 110252763 1888 95392467
chr9 110254653 110254668 RUNX2 JASPAR yes 110252763 1890 95392468
chr9 110254659 110254674 FOXP1 JASPAR yes 110252763 1896 95392469
chr9 110254661 110254676 FOXP1 JASPAR yes 110252763 1898 95392470
chr9 110254664 110254678 ONECUT2 JASPAR yes 110252763 1901 95392471
chr9 110254664 110254678 ONECUT3 JASPAR yes 110252763 1901 95392472
chr9 110254666 110254675 SRY JASPAR yes 110252763 1903 95392473
chr9 110254691 110254701 RELA JASPAR yes 110252763 1928 95392474
chr9 110254691 110254701 REL JASPAR yes 110252763 1928 95392475
chr9 110254700 110254978 CEBPB UCSC Txn Factor no Conserved 110252763 1937 108551301
chr9 110254701 110254705 YY1 TRANSFAC yes 110252763 1938 95392476
chr9 110254704 110254716 DBP JASPAR yes 110252763 1941 95392477
chr9 110254704 110254716 HLF JASPAR yes 110252763 1941 95392478
chr9 110254704 110254716 JDP2 JASPAR yes 110252763 1941 95392479
chr9 110254704 110254716 TEF JASPAR yes 110252763 1941 95392480
chr9 110254704 110254719 JUND JASPAR yes 110252763 1941 95392481
chr9 110254726 110254740 IRF8 JASPAR yes 110252763 1963 95392482
chr9 110254742 110254747 MYB TRANSFAC yes 110252763 1979 95392483
chr9 110254746 110254760 SPI1 JASPAR yes 110252763 1983 95392484
chr9 110254748 110254764 SOX4 JASPAR yes 110252763 1985 95392485
chr9 110254759 110254767 FOXO3 JASPAR yes 110252763 1996 95392486
chr9 110254779 110254793 TCF7L2 JASPAR yes 110252763 2016 95392487
chr9 110254781 110254786 GATA2 JASPAR yes 110252763 2018 95392488
chr9 110254825 110254832 SPIB JASPAR yes 110252763 2062 95392489
chr9 110254830 110254843 DUXA JASPAR yes 110252763 2067 95392490
chr9 110254831 110254842 DUX4 JASPAR yes 110252763 2068 95392491
chr9 110254831 110254845 ATF7 JASPAR yes 110252763 2068 95392492
chr9 110254832 110254843 CEBPB JASPAR yes 110252763 2069 95392493
chr9 110254832 110254844 HLF JASPAR yes 110252763 2069 95392494
chr9 110254832 110254845 ATF4 JASPAR yes 110252763 2069 95392495
chr9 110254833 110254843 CEBPB JASPAR yes 110252763 2070 95392496
chr9 110254833 110254843 CEBPD JASPAR yes 110252763 2070 95392497
chr9 110254833 110254843 CEBPE JASPAR yes 110252763 2070 95392498
chr9 110254833 110254843 CEBPG JASPAR yes 110252763 2070 95392499
chr9 110254833 110254846 JUN JASPAR yes 110252763 2070 95392500
chr9 110254835 110254841 ATF1 TRANSFAC yes 110252763 2072 95392501
chr9 110254841 110254847 SOX10 JASPAR yes 110252763 2078 95392502
chr9 110254860 110254870 SREBF2 JASPAR yes 110252763 2097 95392503
chr9 110254869 110254874 H4TF1 TRANSFAC yes 110252763 2106 95392504
chr9 110254893 110254904 ESRRB JASPAR yes 110252763 2130 95392505
SNPs associated with KLF4[ENSG00000136826.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr9 110582657 rs549012628 GCTTT G 329894 Heart 0.154824 11209546
chr9 111063068 rs150462577 C T 810305 Pancreas 0.379698 11213662
chr9 110234509 rs181714396 G T 12624 Breast 0.216631 11205883
chr9 110154421 rs817830 T G 92712 Ovary 0.219432 11204917
chr9 110205959 rs200822920 CAG C 41174 Stomach 0.272491 11205621
chr9 110287340 rs140818400 A AT 34577 Adrenal 0.228088 11206382
Details of KLF4[ENSG00000136826.10]
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Genomic Location chr9:110247133-110252763[-]
TSS 110252763
Gene Name KLF4
Ensembl ID ENSG00000136826.10
ENTREZID 9314
Uniprot
O43474
Protein Name
Krueppel-like factor 4
Kruppel-like factor 4
Kruppel-like factor 4 short isoform
Expression levels of KLF4[ENSG00000136826.10]
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