EnhancerDB
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Enhancers that regulate XCL1[ENSG00000143184.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 168433465 168471139 enh12354 168545711 74572
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 168446219 168446589 vista3807 168545711 99122
VISTA
chr1 168467604 168467716 vista3808 168545711 77995
VISTA
chr1 168471389 168485955 enh12355 168545711 59756
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Blood (GM12878) Placenta Uterus Thymus Stomach
chr1 168479157 168479362 vista3809 168545711 66349
VISTA
chr1 168479815 168480142 vista3810 168545711 65569
VISTA
chr1 168483874 168484202 vista3811 168545711 61509
VISTA
chr1 168487005 168493135 enh47250 168545711 52576
Thymus Blood (T-cell)
chr1 168489681 168489889 vista3812 168545711 55822
VISTA
chr1 168498965 168507075 enh47251 168545711 38636
Blood (T-cell) Peripheral Blood (MM.1S) Spleen Thymus Stomach
chr1 168504922 168505324 vista3813 168545711 40387
VISTA
chr1 168518365 168529155 enh92122 168545711 16556
Cervix (HeLa-S3) Liver (HepG2) Blood (T-cell)
chr1 168526950 168527356 vista3814 168545711 18355
VISTA
chr1 168531443 168531650 vista3815 168545711 14061
VISTA
chr1 168552565 168556715 enh98560 168545711 6854
Uterus
chr1 168567005 168575104 enh50017 168545711 21294
Uterus Brain (SK-N-SH) Large Intestine
chr1 168576425 168585755 enh43075 168545711 30714
Brain (SK-N-SH) Large Intestine Ovary Esophagus Stomach Uterus Kidney Muscle (Myotube) Neural Stem Cells (H9) Heart
chr1 168582981 168583414 vista3816 168545711 37270
VISTA
chr1 168588609 168600955 enh27204 168545711 42898
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Lung (A549) Thyroid Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Heart
chr1 168594082 168594481 vista3817 168545711 48371
VISTA
chr1 168602385 168608895 enh27205 168545711 56674
Skin (Keratinocyte) Large Intestine Astrocyte Lung (PC-9) Uterus Stomach
chr1 168610458 168617235 enh27206 168545711 64747
Muscle (Myoblast) Astrocyte Large Intestine
chr1 168620985 168629615 enh27207 168545711 75274
Astrocyte Muscle (Myotube) Large Intestine
chr1 168631785 168635935 enh50018 168545711 86074
Liver Large Intestine
chr1 168643785 168648695 enh722 168545711 98074
Blood (Karpas-422)
Transcript facotrs that regulate XCL1[ENSG00000143184.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with XCL1[ENSG00000143184.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 169072135 rs79908836 T C 520820 Esophagus 0.336305 714861
chr1 168695653 rs115208336 T C 144338 Heart 0.207925 711783
chr1 168397414 rs2268541 A G 148297 Heart 0.0445456 708789
chr1 168087553 rs73030217 A G 458158 Ovary 0.349462 706647
chr1 168341108 rs2284760 A G 204603 Liver 0.0471965 708204
Details of XCL1[ENSG00000143184.4]
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Genomic Location chr1:168545711-168551315[+]
TSS 168545711
Gene Name XCL1
Ensembl ID ENSG00000143184.4
ENTREZID 6375
Uniprot
P47992
Protein Name
Lymphotactin
Expression levels of XCL1[ENSG00000143184.4]
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