EnhancerDB
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  3. XCL2[ENSG00000143185.3]
Enhancers that regulate XCL2[ENSG00000143185.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 168406485 168416355 enh47249 168513235 96880
Brain (SK-N-SH) Blood (T-cell) Pancreas (Panc1) Uterus Thymus
chr1 168421785 168425935 enh98559 168513235 87300
Uterus
chr1 168433465 168471139 enh12354 168513235 42096
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 168440429 168440721 vista3806 168513235 72514
VISTA
chr1 168446219 168446589 vista3807 168513235 66646
VISTA
chr1 168467604 168467716 vista3808 168513235 45519
VISTA
chr1 168471389 168485955 enh12355 168513235 27280
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Blood (GM12878) Placenta Uterus Thymus Stomach
chr1 168479157 168479362 vista3809 168513235 33873
VISTA
chr1 168479815 168480142 vista3810 168513235 33093
VISTA
chr1 168483874 168484202 vista3811 168513235 29033
VISTA
chr1 168487005 168493135 enh47250 168513235 20100
Thymus Blood (T-cell)
chr1 168489681 168489889 vista3812 168513235 23346
VISTA
chr1 168498965 168507075 enh47251 168513235 6160
Blood (T-cell) Peripheral Blood (MM.1S) Spleen Thymus Stomach
chr1 168504922 168505324 vista3813 168513235 7911
VISTA
chr1 168518365 168529155 enh92122 168513235 5130
Cervix (HeLa-S3) Liver (HepG2) Blood (T-cell)
chr1 168526950 168527356 vista3814 168513235 13715
VISTA
chr1 168531443 168531650 vista3815 168513235 18208
VISTA
chr1 168552565 168556715 enh98560 168513235 39330
Uterus
chr1 168567005 168575104 enh50017 168513235 53770
Uterus Brain (SK-N-SH) Large Intestine
chr1 168576425 168585755 enh43075 168513235 63190
Brain (SK-N-SH) Large Intestine Ovary Esophagus Stomach Uterus Kidney Muscle (Myotube) Neural Stem Cells (H9) Heart
chr1 168582981 168583414 vista3816 168513235 69746
VISTA
chr1 168588609 168600955 enh27204 168513235 75374
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Lung (A549) Thyroid Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Heart
chr1 168594082 168594481 vista3817 168513235 80847
VISTA
chr1 168602385 168608895 enh27205 168513235 89150
Skin (Keratinocyte) Large Intestine Astrocyte Lung (PC-9) Uterus Stomach
chr1 168610458 168617235 enh27206 168513235 97223
Muscle (Myoblast) Astrocyte Large Intestine
Transcript facotrs that regulate XCL2[ENSG00000143185.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with XCL2[ENSG00000143185.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 168500219 rs1323533 C A 9784 Esophagus 0.00203818 709966
chr1 168500750 rs1040508 C T 9253 Spleen 0.000212079 709974
chr1 167703402 rs12565023 A G 806601 Liver 0.0458435 704966
chr1 168500219 rs1323533 C A 9784 Stomach 1.07557e-05 709966
chr1 168500750 rs1040508 C T 9253 Adrenal 0.0299602 709974
Details of XCL2[ENSG00000143185.3]
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Genomic Location chr1:168510003-168513235[-]
TSS 168513235
Gene Name XCL2
Ensembl ID ENSG00000143185.3
ENTREZID 6846
Uniprot
Q9UBD3
Protein Name
Cytokine SCM-1 beta
Expression levels of XCL2[ENSG00000143185.3]
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