EnhancerDB
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Enhancers that regulate PTPN7[ENSG00000143851.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 202022729 202063855 enh12534 202130716 66861
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr1 202045307 202045525 vista4594 202130716 85191
VISTA
chr1 202054141 202054434 vista4595 202130716 76282
VISTA
chr1 202055098 202055409 vista4596 202130716 75307
VISTA
chr1 202056138 202056515 vista4597 202130716 74201
VISTA
chr1 202068088 202086155 enh12535 202130716 44561
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr1 202075010 202075191 vista4598 202130716 55525
VISTA
chr1 202077636 202077876 vista4599 202130716 52840
VISTA
chr1 202131734 202131905 vista4600 202130716 1018
VISTA
chr1 202132024 202132258 vista4601 202130716 1308
VISTA
chr1 202138009 202143464 enh43111 202130716 7293
Muscle (Myotube) Brain (SK-N-SH)
chr1 202151865 202156015 enh87664 202130716 21149
Pancreas
chr1 202161674 202161898 vista4602 202130716 30958
VISTA
chr1 202164825 202177215 enh61948 202130716 34109
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Stomach Lung (PC-9) Uterus Blood (T-cell) Epithelial (MCF-7)
chr1 202183925 202193755 enh47278 202130716 53209
Esophagus Thyroid Lung (PC-9) Breast Thymus
chr1 202200625 202204775 enh12536 202130716 69909
Placenta
chr1 202208236 202213154 enh89530 202130716 77520
Prostate (RWPE1)
chr1 202214153 202214446 vista4603 202130716 83437
VISTA
chr1 202214577 202219355 enh89531 202130716 83861
Prostate (RWPE1)
chr1 202216987 202217221 vista4604 202130716 86271
VISTA
chr1 202217450 202217807 vista4605 202130716 86734
VISTA
chr1 202219033 202219251 vista4606 202130716 88317
VISTA
Transcript facotrs that regulate PTPN7[ENSG00000143851.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 202128082 202131817 POLR2A UCSC Txn Factor no Conserved 202130716 1101 107858046
chr1 202129792 202132536 ZNF274 GTRD no Blood (GM12878) 202130716 924 107858047
chr1 202129792 202132536 ZNF274 GTRD no Blood (GM12878) 202130716 924 107858048
chr1 202129914 202132966 ZNF274 GTRD no Blood (GM12878) 202130716 802 107858049
chr1 202129914 202132966 ZNF274 GTRD no Blood (GM12878) 202130716 802 107858050
chr1 202129996 202133197 ZBTB33 GTRD no Lung (A549) 202130716 720 107858051
chr1 202129996 202133197 ZBTB33 GTRD no Lung (A549) 202130716 720 107858052
chr1 202131042 202131760 ZNF274 GTRD no Blood (GM12878) 202130716 326 107858053
chr1 202131116 202133461 ZNF143 GTRD no Epithelial (MCF-7) 202130716 400 107858054
chr1 202131116 202133461 ZNF143 GTRD no Epithelial (MCF-7) 202130716 400 107858055
chr1 202131241 202131817 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 525 107858056
chr1 202131395 202133674 ZNF143 GTRD no Epithelial (MCF-7) 202130716 679 107858057
chr1 202131395 202133674 ZNF143 GTRD no Epithelial (MCF-7) 202130716 679 107858058
chr1 202131401 202133534 ZNF143 GTRD no Epithelial (MCF-7) 202130716 685 107858059
chr1 202131401 202133534 ZNF143 GTRD no Epithelial (MCF-7) 202130716 685 107858060
chr1 202131455 202133451 ZNF143 GTRD no Epithelial (MCF-7) 202130716 739 107858061
chr1 202131455 202133451 ZNF143 GTRD no Epithelial (MCF-7) 202130716 739 107858062
chr1 202131559 202131927 ZNF274 GTRD no Blood (GM12878) 202130716 843 107858063
chr1 202131579 202133467 ZNF143 GTRD no Epithelial (MCF-7) 202130716 863 107858064
chr1 202131579 202133467 ZNF143 GTRD no Epithelial (MCF-7) 202130716 863 107858065
chr1 202131588 202132956 ZNF143 GTRD no Epithelial (MCF-7) 202130716 872 107858066
chr1 202131588 202132956 ZNF143 GTRD no Epithelial (MCF-7) 202130716 872 107858067
chr1 202131593 202133305 ZNF143 GTRD no Epithelial (MCF-7) 202130716 877 107858068
chr1 202131593 202133305 ZNF143 GTRD no Epithelial (MCF-7) 202130716 877 107858069
chr1 202131608 202133488 ZNF143 GTRD no Epithelial (MCF-7) 202130716 892 107858070
chr1 202131608 202133488 ZNF143 GTRD no Epithelial (MCF-7) 202130716 892 107858071
chr1 202131610 202131874 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 202130716 894 107858072
chr1 202131613 202133304 ZNF143 GTRD no Epithelial (MCF-7) 202130716 897 107858073
chr1 202131613 202133304 ZNF143 GTRD no Epithelial (MCF-7) 202130716 897 107858074
chr1 202131615 202133432 ZNF143 GTRD no Epithelial (MCF-7) 202130716 899 107858075
chr1 202131615 202133432 ZNF143 GTRD no Epithelial (MCF-7) 202130716 899 107858076
chr1 202131616 202133459 ZNF143 GTRD no Epithelial (MCF-7) 202130716 900 107858077
chr1 202131616 202133459 ZNF143 GTRD no Epithelial (MCF-7) 202130716 900 107858078
chr1 202131618 202133308 ZNF143 GTRD no Epithelial (MCF-7) 202130716 902 107858079
chr1 202131618 202133308 ZNF143 GTRD no Epithelial (MCF-7) 202130716 902 107858080
chr1 202131680 202131910 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 964 107858081
chr1 202131686 202133364 ZNF143 GTRD no Epithelial (MCF-7) 202130716 970 107858082
chr1 202131686 202133364 ZNF143 GTRD no Epithelial (MCF-7) 202130716 970 107858083
chr1 202131690 202133540 ZNF143 GTRD no Epithelial (MCF-7) 202130716 974 107858084
chr1 202131690 202133540 ZNF143 GTRD no Epithelial (MCF-7) 202130716 974 107858085
chr1 202131722 202133342 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1006 107858086
chr1 202131722 202133342 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1006 107858087
chr1 202131728 202133305 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1012 107858088
chr1 202131728 202133305 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1012 107858089
chr1 202131735 202131744 NFIX JASPAR yes 202130716 1019 118434124
chr1 202131735 202131745 NFIA JASPAR yes 202130716 1019 118434125
chr1 202131736 202131745 HIC2 JASPAR yes 202130716 1020 118434126
chr1 202131737 202131743 NFIC JASPAR yes 202130716 1021 118434127
chr1 202131738 202132138 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1022 107858090
chr1 202131738 202132138 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1022 107858091
chr1 202131754 202131760 YY1 JASPAR yes 202130716 1038 118434128
chr1 202131754 202133103 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1038 107858092
chr1 202131754 202133103 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1038 107858093
chr1 202131763 202131775 PKNOX1 JASPAR yes 202130716 1047 118434129
chr1 202131763 202131775 PKNOX2 JASPAR yes 202130716 1047 118434130
chr1 202131763 202131775 TGIF1 JASPAR yes 202130716 1047 118434131
chr1 202131763 202131775 TGIF2 JASPAR yes 202130716 1047 118434132
chr1 202131763 202131780 PAX9 JASPAR yes 202130716 1047 118434133
chr1 202131766 202131777 NFE2 JASPAR yes 202130716 1050 118434134
chr1 202131768 202131774 ATF1 TRANSFAC yes 202130716 1052 118434135
chr1 202131768 202131775 XBP1 TRANSFAC yes 202130716 1052 118434136
chr1 202131768 202131780 CREB1 JASPAR yes 202130716 1052 118434137
chr1 202131775 202131796 ZNF263 JASPAR yes 202130716 1059 118434138
chr1 202131780 202133488 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1064 107858094
chr1 202131780 202133488 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1064 107858095
chr1 202131786 202131796 MZF1 JASPAR yes 202130716 1070 118434139
chr1 202131788 202131798 SP1 JASPAR yes 202130716 1072 118434140
chr1 202131789 202131795 SP1 TRANSFAC yes 202130716 1073 118434141
chr1 202131789 202131799 SP1 JASPAR yes 202130716 1073 118434142
chr1 202131793 202131799 MZF1 JASPAR yes 202130716 1077 118434143
chr1 202131799 202132239 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1083 107858096
chr1 202131799 202132239 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1083 107858097
chr1 202131809 202133156 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1093 107858098
chr1 202131809 202133156 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1093 107858099
chr1 202131815 202131826 NFKB1 JASPAR yes 202130716 1099 118434144
chr1 202131816 202131826 NFKB1 JASPAR yes 202130716 1100 118434145
chr1 202131817 202132858 P63 GTRD no Skin (Keratinocyte) 202130716 1101 107858100
chr1 202131817 202132858 P63 GTRD no Skin (Keratinocyte) 202130716 1101 107858101
chr1 202131819 202131824 SP1 TRANSFAC yes 202130716 1103 118434146
chr1 202131823 202131838 NR2C2 JASPAR yes 202130716 1107 118434147
chr1 202131843 202131858 HNF4A JASPAR yes 202130716 1127 118434148
chr1 202131844 202131859 HNF4G JASPAR yes 202130716 1128 118434149
chr1 202131848 202132364 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1132 107858102
chr1 202131848 202132364 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1132 107858103
chr1 202131850 202131854 NFE TRANSFAC yes 202130716 1134 118434150
chr1 202131852 202131871 REST JASPAR yes 202130716 1136 118434151
chr1 202131853 202133479 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1137 107858104
chr1 202131853 202133479 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1137 107858105
chr1 202131859 202133136 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1143 107858106
chr1 202131859 202133136 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1143 107858107
chr1 202131874 202132584 ZNF274 GTRD no Bone Marrow (K562) 202130716 1158 107858108
chr1 202131874 202132584 ZNF274 GTRD no Bone Marrow (K562) 202130716 1158 107858109
chr1 202131876 202132398 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1160 107858110
chr1 202131876 202132398 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1160 107858111
chr1 202131879 202133073 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1163 107858112
chr1 202131879 202133073 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1163 107858113
chr1 202131883 202133330 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1167 107858114
chr1 202131883 202133330 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1167 107858115
chr1 202131888 202131903 NR2C2 JASPAR yes 202130716 1172 118434152
chr1 202131893 202131903 MZF1 JASPAR yes 202130716 1177 118434153
chr1 202131895 202133437 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1179 107858116
chr1 202131895 202133437 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1179 107858117
chr1 202131896 202131902 SP1 TRANSFAC yes 202130716 1180 118434154
chr1 202131930 202133196 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1214 107858118
chr1 202131939 202132515 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1223 107858119
chr1 202131940 202133403 P63 GTRD no Skin (Keratinocyte) 202130716 1224 107858120
chr1 202131942 202133096 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1226 107858121
chr1 202131944 202133030 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1228 107858122
chr1 202131944 202133115 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1228 107858123
chr1 202131957 202132237 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1241 107858124
chr1 202131958 202133476 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1242 107858125
chr1 202131968 202132258 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1252 107858126
chr1 202131968 202132732 ZBTB33 GTRD no Lung (A549) 202130716 1252 107858127
chr1 202131970 202132250 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1254 107858128
chr1 202131976 202132376 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1260 107858129
chr1 202131979 202132349 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1263 107858130
chr1 202131980 202132470 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1264 107858131
chr1 202131983 202133456 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1267 107858132
chr1 202131985 202132421 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1269 107858133
chr1 202132002 202132442 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1286 107858134
chr1 202132004 202133223 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1288 107858135
chr1 202132015 202132391 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1299 107858136
chr1 202132036 202132054 NR3C1 JASPAR yes 202130716 1320 118434155
chr1 202132037 202133454 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1321 107858137
chr1 202132056 202132066 POU6F2 JASPAR yes 202130716 1340 118434156
chr1 202132058 202132262 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1342 107858138
chr1 202132062 202132342 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1346 107858139
chr1 202132073 202132083 POU6F2 JASPAR yes 202130716 1357 118434157
chr1 202132075 202132958 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1359 107858140
chr1 202132080 202132083 MYB TRANSFAC yes 202130716 1364 118434158
chr1 202132084 202132097 NR2F1 JASPAR yes 202130716 1368 118434159
chr1 202132086 202132097 ESRRA JASPAR yes 202130716 1370 118434160
chr1 202132086 202132097 ESRRB JASPAR yes 202130716 1370 118434161
chr1 202132087 202132095 NR4A2 JASPAR yes 202130716 1371 118434162
chr1 202132088 202132321 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1372 107858141
chr1 202132093 202133432 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1377 107858142
chr1 202132095 202132099 LFA1 TRANSFAC yes 202130716 1379 118434163
chr1 202132097 202132115 MAFF JASPAR yes 202130716 1381 118434164
chr1 202132099 202132110 NRL JASPAR yes 202130716 1383 118434165
chr1 202132099 202132114 MAFK JASPAR yes 202130716 1383 118434166
chr1 202132107 202132749 P63 GTRD no Skin (Keratinocyte) 202130716 1391 107858143
chr1 202132115 202132136 ZNF263 JASPAR yes 202130716 1399 118434167
chr1 202132118 202132139 ZNF263 JASPAR yes 202130716 1402 118434168
chr1 202132125 202132136 FLI1 JASPAR yes 202130716 1409 118434169
chr1 202132129 202132148 CTCF JASPAR yes 202130716 1413 118434170
chr1 202132130 202132141 E2F6 JASPAR yes 202130716 1414 118434171
chr1 202132166 202132863 P63 GTRD no Skin (Keratinocyte) 202130716 1450 107858144
chr1 202132167 202133420 ZNF143 GTRD no Epithelial (MCF-7) 202130716 1451 107858145
chr1 202132168 202132178 SREBF1 JASPAR yes 202130716 1452 118434172
chr1 202132168 202132178 SREBF2 JASPAR yes 202130716 1452 118434173
chr1 202132168 202132268 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1452 107858146
chr1 202132172 202132187 AR JASPAR yes 202130716 1456 118434174
chr1 202132184 202132190 TCF4 TRANSFAC yes 202130716 1468 118434175
chr1 202132196 202133393 TCF7L2 GTRD no Colon (HCT116) 202130716 1480 107858147
chr1 202132199 202132214 NR2C2 JASPAR yes 202130716 1483 118434176
chr1 202132209 202132429 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 202130716 1493 107858148
chr1 202132220 202132241 ZNF263 JASPAR yes 202130716 1504 118434177
chr1 202132237 202132258 ZNF263 JASPAR yes 202130716 1521 118434178
chr1 202132249 202132254 TFAP2A TRANSFAC yes 202130716 1533 118434179
chr1 202132249 202132255 MZF1 JASPAR yes 202130716 1533 118434180
chr1 202132251 202132256 ETS2 TRANSFAC yes 202130716 1535 118434181
SNPs associated with PTPN7[ENSG00000143851.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 201856521 rs10920270 C G 259620 Esophagus 0.205678 857990
chr1 201467649 rs112133345 C A 648492 Esophagus 0.250011 854258
chr1 201579021 rs628458 A G 537120 Heart 0.393523 855872
chr1 203105523 rs3820150 T C 974807 Pancreas 0.313117 865282
chr1 201268336 rs147369066 A G 847805 Breast 0.00211203 852436
chr1 202131289 rs35587010 G A,T 573 Spleen 0.00325536 860356
chr1 201149402 rs831766 T A 966739 Ovary 0.325481 851549
chr1 201896563 rs7548002 G A 219578 Uterus 0.371475 858380
chr1 202040311 rs150628768 A G 75830 Thyroid 0.262054 859611
chr1 202160970 rs3100127 C A 30254 Lung 0.0244794 860766
chr1 202130166 rs4420146 G A 0 Adrenal 2.61495e-08 860341
Details of PTPN7[ENSG00000143851.11]
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Genomic Location chr1:202116141-202130716[-]
TSS 202130716
Gene Name PTPN7
Ensembl ID ENSG00000143851.11
ENTREZID 5778
Uniprot
A0A024R9A7
P35236
B4DZD9
Protein Name
isoform CRA_a
isoform CRA_b
isoform CRA_d
non-receptor type 7
non-receptor type 7
non-receptor type 7
Protein tyrosine phosphatase
Protein tyrosine phosphatase
Protein tyrosine phosphatase
Tyrosine-protein phosphatase non-receptor type 7
Expression levels of PTPN7[ENSG00000143851.11]
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