EnhancerDB
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Enhancers that regulate PRKCA[ENSG00000154229.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 64194865 64199015 enh112518 64298754 99739
Brain (SK-N-MC)
chr17 64203771 64207921 enh69307 64298754 90833
Neural Stem Cells (H9)
chr17 64207206 64207303 vista25585 64298754 91451
VISTA
chr17 64223485 64233755 enh52554 64298754 64999
Muscle (A673) Liver (HepG2) Brain (SK-N-MC) Large Intestine
chr17 64234805 64238995 enh81249 64298754 59759
Prostate (PC-3) Cervix (HeLa-S3) Lung (PC-9)
chr17 64240545 64244735 enh94313 64298754 54019
Spleen Peripheral Blood (MM.1S) Blood (T-cell) Brain (SK-N-MC)
chr17 64262667 64266983 enh81250 64298754 31771
Pancreas Prostate (PC-3) Uterus Bone (Osteoblast)
chr17 64267134 64275015 enh32293 64298754 23739
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Astrocyte Bone (Osteoblast) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr17 64271821 64272172 vista25586 64298754 26582
VISTA
chr17 64282105 64291955 enh52555 64298754 6799
Uterus Large Intestine
chr17 64301184 64301397 vista25587 64298754 2430
VISTA
chr17 64304825 64315995 enh81251 64298754 6071
Prostate (PC-3) Brain (SK-N-SH) Blood (T-cell)
chr17 64316985 64329615 enh99445 64298754 18231
Brain (SK-N-SH) Peripheral Blood (MM.1S) Lung (PC-9) Uterus Blood (T-cell) Stomach
chr17 64331632 64359375 enh32294 64298754 32878
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Liver Astrocyte Stomach Muscle (A673) Uterus Lung (PC-9) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr17 64360714 64365541 enh69308 64298754 61960
Neural Stem Cells (H9)
chr17 64365805 64386115 enh17313 64298754 67051
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Liver Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Uterus Lung (PC-9) Pancreas Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
chr17 64370414 64370595 vista25588 64298754 71660
VISTA
chr17 64380133 64380302 vista25589 64298754 81379
VISTA
chr17 64386605 64390755 enh112519 64298754 87851
Brain (SK-N-MC)
chr17 64392225 64406302 enh52556 64298754 93471
Bone Marrow (K562) Brain (SK-N-SH) Large Intestine Peripheral Blood (MM.1S) Uterus Spleen Neural Stem Cells (H9) Blood (T-cell)
Transcript facotrs that regulate PRKCA[ENSG00000154229.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 64300716 64301386 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64298754 1962 108284316
chr17 64300823 64301547 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2069 108284317
chr17 64300961 64301285 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64298754 2207 108284318
chr17 64300993 64301363 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2239 108284319
chr17 64300993 64301437 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 64298754 2239 108284320
chr17 64300997 64301357 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2243 108284321
chr17 64301020 64301276 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64298754 2266 108284322
chr17 64301030 64301340 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 64298754 2276 108284323
chr17 64301031 64301355 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64298754 2277 108284324
chr17 64301032 64301288 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 64298754 2278 108284325
chr17 64301032 64301388 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 64298754 2278 108284326
chr17 64301060 64301304 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2306 108284327
chr17 64301071 64301295 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 64298754 2317 108284328
chr17 64301085 64301301 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 64298754 2331 108284329
chr17 64301087 64301263 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2333 108284330
chr17 64301111 64301281 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2357 108284331
chr17 64301184 64301191 NFATC2 JASPAR yes 64298754 2430 21277093
chr17 64301187 64301282 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2433 108284332
chr17 64301192 64301207 ZIC3 JASPAR yes 64298754 2438 21277094
chr17 64301193 64301204 EBF1 JASPAR yes 64298754 2439 21277095
chr17 64301221 64301225 YY1 TRANSFAC yes 64298754 2467 21277096
chr17 64301223 64301233 MNX1 JASPAR yes 64298754 2469 21277097
chr17 64301224 64301232 BARX1 JASPAR yes 64298754 2470 21277098
chr17 64301224 64301594 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 64298754 2470 108284333
chr17 64301232 64301247 NFYB JASPAR yes 64298754 2478 21277099
chr17 64301234 64301250 NFYA JASPAR yes 64298754 2480 21277100
chr17 64301235 64301253 NFYA JASPAR yes 64298754 2481 21277101
chr17 64301239 64301243 H1TF2 TRANSFAC yes 64298754 2485 21277102
chr17 64301239 64301243 NFE TRANSFAC yes 64298754 2485 21277103
chr17 64301239 64301243 SRF TRANSFAC yes 64298754 2485 21277104
chr17 64301262 64301268 ZNF354C JASPAR yes 64298754 2508 21277105
chr17 64301274 64301295 IRF1 JASPAR yes 64298754 2520 21277106
chr17 64301278 64301290 IRF1 JASPAR yes 64298754 2524 21277107
chr17 64301278 64301292 IRF7 JASPAR yes 64298754 2524 21277108
chr17 64301278 64301293 IRF9 JASPAR yes 64298754 2524 21277109
chr17 64301284 64301302 IRF2 JASPAR yes 64298754 2530 21277110
chr17 64301285 64301306 IRF1 JASPAR yes 64298754 2531 21277111
chr17 64301289 64301301 IRF1 JASPAR yes 64298754 2535 21277112
chr17 64301289 64301304 IRF9 JASPAR yes 64298754 2535 21277113
chr17 64301294 64301298 YY1 TRANSFAC yes 64298754 2540 21277114
chr17 64301305 64302929 ZNF143 GTRD no Epithelial (MCF-7) 64298754 2551 108284334
chr17 64301311 64301315 H4TF2 TRANSFAC yes 64298754 2557 21277115
chr17 64301328 64301342 POU1F1 JASPAR yes 64298754 2574 21277116
chr17 64301329 64301342 POU3F3 JASPAR yes 64298754 2575 21277117
chr17 64301330 64301334 YY1 TRANSFAC yes 64298754 2576 21277118
chr17 64301330 64301341 FOXB1 JASPAR yes 64298754 2576 21277119
chr17 64301330 64301342 POU2F1 JASPAR yes 64298754 2576 21277120
chr17 64301333 64301349 POU4F2 JASPAR yes 64298754 2579 21277121
chr17 64301344 64301359 SOX21 JASPAR yes 64298754 2590 21277122
chr17 64301351 64301361 MEF2A JASPAR yes 64298754 2597 21277123
chr17 64301352 64301356 YY1 TRANSFAC yes 64298754 2598 21277124
chr17 64301367 64301375 FOXO3 JASPAR yes 64298754 2613 21277125
SNPs associated with PRKCA[ENSG00000154229.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 64506950 rs228877 A G 0 Esophagus 0.217957 4998371
chr17 64528105 rs7225362 G C 0 Esophagus 4.46817e-06 4998611
chr17 64304968 rs9900934 C T 0 Esophagus 0.00176797 4995969
chr17 64311683 rs11658550 C T 0 Heart 2.80566e-30 4996051
chr17 64313077 rs7406054 G A 0 Heart 2.50059e-05 4996071
chr17 64807228 rs4791035 C G 367 Ovary 0.225124 5001246
chr17 64323870 rs9910946 A G 0 Thyroid 6.84718e-13 4996189
chr17 63771007 rs9972942 A G 527747 Liver 0.444874 4993839
Details of PRKCA[ENSG00000154229.7]
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Genomic Location chr17:64298754-64806861[+]
TSS 64298754
Gene Name PRKCA
Ensembl ID ENSG00000154229.7
ENTREZID 5578
Uniprot
Q7Z727
P17252
Protein Name
alpha
PRKCA protein
Protein kinase C
Protein kinase C
Protein kinase C alpha type
Expression levels of PRKCA[ENSG00000154229.7]
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