EnhancerDB
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  3. CCDC28B[ENSG00000160050.10]
Enhancers that regulate CCDC28B[ENSG00000160050.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 32574975 32601599 enh207 32665987 64388
Bone Marrow (K562) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Colon (HCT116) Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 32602345 32608115 enh26613 32665987 57872
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Astrocyte Stomach Colon (HCT116) Lung (PC-9) Pancreas (Panc1) Uterus Blood (T-cell) Epithelial (MCF-7)
chr1 32613525 32619315 enh26614 32665987 46672
Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673) Uterus
chr1 32656692 32656709 vista1099 32665987 9278
VISTA
chr1 32698385 32707335 enh208 32665987 32398
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Blood (Karpas-422) Muscle (Myoblast) Pancreas Muscle (Myotube)
chr1 32701561 32701886 vista1100 32665987 35574
VISTA
chr1 32714985 32735095 enh209 32665987 48998
Liver (HepG2) Blood (OCI-LY7) Blood (Karpas-422) Blood (T-cell) Stomach
chr1 32715599 32716062 vista1101 32665987 49612
VISTA
chr1 32729476 32729672 vista1102 32665987 63489
VISTA
chr1 32732571 32732683 vista1103 32665987 66584
VISTA
Transcript facotrs that regulate CCDC28B[ENSG00000160050.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with CCDC28B[ENSG00000160050.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 31981773 rs116397305 G T 684214 Esophagus 0.00722398 212746
chr1 31953223 rs35927307 C G 712764 Esophagus 0.248918 212353
chr1 33469274 rs11810032 C A 798286 Heart 0.244563 221510
chr1 32334427 rs143435989 A G 331560 Breast 0.199739 215231
chr1 32489889 rs142757624 G GT 176098 Spleen 0.0107831 216610
chr1 33550200 rs148367165 A C,T 879212 Uterus 0.34589 221978
chr1 33502184 rs11591185 G A 831196 Liver 0.111585 221656
chr1 32390324 rs563978 C T 275663 Stomach 0.430937 215800
Details of CCDC28B[ENSG00000160050.10]
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Genomic Location chr1:32665987-32670988[+]
TSS 32665987
Gene Name CCDC28B
Ensembl ID ENSG00000160050.10
ENTREZID 79140
Uniprot
Q9BUN5
Protein Name
Coiled-coil domain-containing protein 28B
Expression levels of CCDC28B[ENSG00000160050.10]
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