EnhancerDB
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Enhancers that regulate LSM3[ENSG00000170860.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 14167210 14167731 vista40046 14219858 52127
VISTA
chr3 14183807 14188515 enh115770 14219858 31343
Brain (SK-N-SH)
chr3 14227965 14232115 enh76873 14219858 8107
Muscle (A673)
chr3 14236465 14258535 enh20363 14219858 16607
Bone Marrow (K562) Liver Astrocyte Pancreas Uterus Kidney Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
chr3 14246419 14246703 vista40047 14219858 26561
VISTA
chr3 14257734 14258042 vista40048 14219858 37876
VISTA
chr3 14262645 14281189 enh20364 14219858 42787
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Esophagus Lung Blood (GM12878) Stomach Placenta Thyroid Lung (PC-9) Spleen Muscle (Myotube) Uterus Heart
chr3 14283365 14300295 enh20365 14219858 63507
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Esophagus Liver Placenta Thyroid Uterus
chr3 14287496 14287739 vista40049 14219858 67638
VISTA
chr3 14300597 14334875 enh20366 14219858 80739
Bone Marrow (K562) Cervix (HeLa-S3) Large Intestine Ovary Lung (PC-9) Astrocyte Bone (Osteoblast) Stomach Placenta Uterus Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript facotrs that regulate LSM3[ENSG00000170860.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with LSM3[ENSG00000170860.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 14255767 rs4575884 T C 13148 Esophagus 0.175858 6566512
chr3 13573936 rs144984192 G T 645922 Pancreas 0.366557 6563011
chr3 14770856 rs112526257 G A 528237 Breast 0.44592 6571605
chr3 14338737 rs78030326 G A 96118 Spleen 0.419487 6567796
chr3 14458008 rs78040670 T C 215389 Ovary 0.0937729 6569465
chr3 14416820 rs11706525 G A 174201 Liver 0.139151 6568958
chr3 13842611 rs11128661 G A 377247 Lung 0.314092 6564582
chr3 14661480 rs77922922 G A 418861 Stomach 0.0482279 6570956
chr3 14592530 rs77391500 C A,T 349911 Adrenal 0.182472 6570517
Details of LSM3[ENSG00000170860.3]
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Genomic Location chr3:14219858-14242619[+]
TSS 14219858
Gene Name LSM3
Ensembl ID ENSG00000170860.3
ENTREZID 27258
Uniprot
P62310
Protein Name
U6 snRNA-associated Sm-like protein LSm3
Expression levels of LSM3[ENSG00000170860.3]
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