EnhancerDB
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Enhancers that regulate SCG2[ENSG00000171951.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr2 224366507 224370833 enh90045 224467221 96388
Prostate (RWPE1)
chr2 224385770 224392486 enh86392 224467221 74735
Colon (HCT116)
chr2 224399258 224406155 enh34316 224467221 61066
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Astrocyte Lung (A549) Muscle (A673) Colon (HCT116) Lung (PC-9) Muscle (Myotube) Heart
chr2 224408165 224416795 enh34317 224467221 50426
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Muscle (A673) Lung (PC-9) Pancreas (Panc1)
chr2 224413942 224414282 vista34885 224467221 52939
VISTA
chr2 224423885 224430591 enh34318 224467221 36630
Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Muscle (A673) Lung (PC-9) Pancreas (Panc1) Epithelial (MCF-7)
chr2 224428219 224428432 vista34886 224467221 38789
VISTA
chr2 224439167 224447935 enh34319 224467221 19286
Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Lung (A549) Muscle (A673) Colon (HCT116) Muscle (Myoblast) Muscle (Myotube)
chr2 224448505 224461248 enh34320 224467221 5973
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Astrocyte Muscle (Myoblast) Stomach
chr2 224452508 224452858 vista34887 224467221 14363
VISTA
chr2 224467803 224467963 vista34888 224467221 582
VISTA
chr2 224474487 224480455 enh19261 224467221 7266
Cervix (HeLa-S3) Large Intestine Bone (Osteoblast) Placenta Colon (HCT116) Pancreas Pancreas (Panc1) Uterus Stomach
chr2 224477772 224478078 vista34889 224467221 10551
VISTA
chr2 224480925 224485075 enh76583 224467221 13704
Muscle (A673)
chr2 224488445 224494915 enh34321 224467221 21224
Astrocyte Muscle (A673) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube)
chr2 224497865 224502015 enh108813 224467221 30644
Lung (PC-9)
chr2 224503965 224521395 enh19262 224467221 36744
Bone Marrow (K562) Cervix (HeLa-S3) Brain (SK-N-MC) Lung (A549) Muscle (A673) Placenta Neural Stem Cells (H9) Epithelial (MCF-7)
chr2 224529245 224542235 enh76584 224467221 62024
Muscle (A673) Colon (HCT116) Brain (SK-N-MC)
chr2 224542285 224548115 enh97082 224467221 75064
Lung (PC-9) Epithelial (MCF-7)
chr2 224553303 224571986 enh34322 224467221 86082
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Muscle (A673) Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1)
chr2 224564336 224564481 vista34890 224467221 97115
VISTA
Transcript facotrs that regulate SCG2[ENSG00000171951.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr2 224467805 224467810 ETS2 TRANSFAC yes 224467221 584 22215635
chr2 224467834 224467849 LEF1 JASPAR yes 224467221 613 22215636
chr2 224467835 224467850 PRDM1 JASPAR yes 224467221 614 22215637
chr2 224467850 224467856 TBP TRANSFAC yes 224467221 629 22215638
chr2 224467879 224467893 JUN JASPAR yes 224467221 658 22215639
chr2 224467896 224467899 MYB TRANSFAC yes 224467221 675 22215640
chr2 224467907 224467911 YY1 TRANSFAC yes 224467221 686 22215641
chr2 224467919 224467930 FLI1 JASPAR yes 224467221 698 22215642
chr2 224467920 224467925 ETS2 TRANSFAC yes 224467221 699 22215643
chr2 224467920 224467928 FEV JASPAR yes 224467221 699 22215644
chr2 224467921 224467928 SPI1 JASPAR yes 224467221 700 22215645
chr2 224467931 224467943 MEF2A JASPAR yes 224467221 710 22215646
chr2 224467931 224467943 MEF2B JASPAR yes 224467221 710 22215647
chr2 224467931 224467943 MEF2D JASPAR yes 224467221 710 22215648
chr2 224467932 224467942 MEF2A JASPAR yes 224467221 711 22215649
chr2 224467933 224467937 TEAD2 TRANSFAC yes 224467221 712 22215650
chr2 224467933 224467938 TBP TRANSFAC yes 224467221 712 22215651
chr2 224467933 224467939 TMF TRANSFAC yes 224467221 712 22215652
chr2 224467939 224467943 YY1 TRANSFAC yes 224467221 718 22215653
chr2 224467948 224467961 SCRT2 JASPAR yes 224467221 727 22215654
chr2 224467956 224467962 JUN TRANSFAC yes 224467221 735 22215655
SNPs associated with SCG2[ENSG00000171951.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr2 224504445 rs112061923 T C 37224 Esophagus 0.0998264 6393436
chr2 224928811 rs4674864 T C 461590 Esophagus 0.0316443 6397044
chr2 223677951 rs6718498 C G 783707 Esophagus 0.323772 6388070
chr2 224652466 rs771918073 A AAC 185245 Heart 0.350121 6394874
chr2 223977039 rs80314273 G A,C,T 484619 Pancreas 0.319575 6390712
chr2 224447304 rs57320601 A T 14354 Breast 0.188583 6392961
chr2 224334429 rs73992048 G C 127229 Spleen 0.572283 6392280
chr2 225024170 rs6721729 C T 556949 Ovary 0.139755 6397761
chr2 224083274 rs1356418 A G 378384 Thyroid 0.00484911 6391316
chr2 224451988 rs1250905 A G 9670 Liver 0.418407 6393007
Details of SCG2[ENSG00000171951.4]
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Genomic Location chr2:224461658-224467221[-]
TSS 224467221
Gene Name SCG2
Ensembl ID ENSG00000171951.4
ENTREZID 7857
Uniprot
P13521
Protein Name
Menin
Secretogranin-2
Expression levels of SCG2[ENSG00000171951.4]
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