EnhancerDB
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Enhancers that regulate SYNPO2[ENSG00000172403.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr4 119711749 119715899 enh63350 119809996 94097
Esophagus
chr4 119721465 119726655 enh97532 119809996 83341
Stomach Epithelial (MCF-7)
chr4 119729425 119735275 enh36972 119809996 74721
Astrocyte Muscle (A673) Pancreas Uterus Stomach
chr4 119740845 119745015 enh54951 119809996 64981
Liver Large Intestine
chr4 119746205 119751155 enh71400 119809996 58841
Neural Stem Cells (H9)
chr4 119752085 119756915 enh8168 119809996 53081
Blood (Karpas-422)
chr4 119756174 119756657 vista45717 119809996 53339
VISTA
chr4 119784282 119793223 enh71401 119809996 16773
Brain (SK-N-SH) Brain (SK-N-MC) Uterus Muscle (Myoblast) Neural Stem Cells (H9)
chr4 119800684 119804834 enh71402 119809996 5162
Neural Stem Cells (H9)
chr4 119815891 119816222 vista45718 119809996 5895
VISTA
chr4 119818193 119818534 vista45719 119809996 8197
VISTA
chr4 119822405 119843655 enh36973 119809996 12409
Brain (SK-N-SH) Ovary Esophagus Astrocyte Stomach Thyroid Lung (PC-9) Spleen Uterus Heart
chr4 119847145 119851555 enh54952 119809996 37149
Ovary Large Intestine Lung Stomach Uterus Heart
chr4 119857071 119857382 vista45720 119809996 47075
VISTA
chr4 119858522 119865919 enh63351 119809996 48526
Heart Prostate (PC-3) Esophagus Stomach Uterus Neural Stem Cells (H9) Epithelial (MCF-7)
chr4 119866585 119881175 enh65880 119809996 56589
Heart Uterus Spleen Neural Stem Cells (H9) Stomach
chr4 119883665 119898966 enh21748 119809996 73669
Prostate (PC-3) Brain (SK-N-SH) Epithelial (MCF-7) Large Intestine Esophagus Astrocyte Bone (Osteoblast) Lung Stomach Placenta Peripheral Blood (MM.1S) Uterus Adrenal Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
chr4 119890642 119890944 vista45721 119809996 80646
VISTA
chr4 119900273 119913150 enh21749 119809996 90277
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-SH) Epithelial (MCF-7) Prostate (RWPE1) Ovary Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Thyroid Muscle (Myoblast) Breast Spleen Muscle (Myotube) Uterus Heart
chr4 119905071 119905247 vista45722 119809996 95075
VISTA
Transcript facotrs that regulate SYNPO2[ENSG00000172403.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with SYNPO2[ENSG00000172403.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr4 120785114 rs10030254 C T 802712 Esophagus 0.127335 7778871
chr4 119876900 rs33972153 CAT C 0 Esophagus 0.276302 7774684
chr4 119886214 rs78300132 G A 0 Esophagus 0.0856568 7774779
chr4 119803964 rs112348322 G A 6032 Spleen 0.420676 7774093
Details of SYNPO2[ENSG00000172403.6]
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Genomic Location chr4:119809996-119982402[+]
TSS 119809996
Gene Name SYNPO2
Ensembl ID ENSG00000172403.6
ENTREZID 171024
Uniprot
B4E258
Q9UMS6
Protein Name
Synaptopodin 2
Synaptopodin-2
Expression levels of SYNPO2[ENSG00000172403.6]
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