EnhancerDB
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Enhancers that regulate NPAS4[ENSG00000174576.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr11 66089950 66097675 enh14008 66188475 90800
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Stomach Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Muscle (Myotube) Uterus Thymus Heart
chr11 66093813 66094193 vista10657 66188475 94282
VISTA
chr11 66094685 66094783 vista10658 66188475 93692
VISTA
chr11 66118604 66119022 vista10659 66188475 69453
VISTA
chr11 66125242 66129392 enh67814 66188475 59083
Neural Stem Cells (H9)
chr11 66145678 66158735 enh86074 66188475 29740
Ovary Colon (HCT116) Pancreas Pancreas (Panc1) Blood (T-cell) Stomach
chr11 66174005 66182965 enh67815 66188475 5510
Pancreas Neural Stem Cells (H9) Uterus Embryonic Stem Cell Line (H1-hESC)
chr11 66185542 66185902 vista10660 66188475 2573
VISTA
chr11 66208955 66213553 enh79912 66188475 20480
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Bone (Osteoblast) Lung (PC-9)
chr11 66219885 66228393 enh60296 66188475 31410
Lung (PC-9) Prostate (PC-3) Blood (OCI-LY7) Epithelial (MCF-7)
chr11 66221780 66221966 vista10661 66188475 33305
VISTA
Transcript facotrs that regulate NPAS4[ENSG00000174576.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr11 66185374 66186767 REST UCSC Txn Factor no Conserved 66188475 1708 107982659
chr11 66185446 66185966 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2509 107982660
chr11 66185501 66186021 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2454 107982661
chr11 66185506 66185962 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2513 107982662
chr11 66185515 66185979 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2496 107982663
chr11 66185534 66185958 CTCF UCSC Txn Factor no Conserved 66188475 2517 107982664
chr11 66185547 66185943 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2532 107982665
chr11 66185554 66186224 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2251 107982666
chr11 66185560 66185850 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2625 107982667
chr11 66185561 66185921 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2554 107982668
chr11 66185564 66185948 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2527 107982669
chr11 66185566 66185936 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2539 107982670
chr11 66185567 66185897 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2578 107982671
chr11 66185568 66186767 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66188475 1708 107982672
chr11 66185570 66185894 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2581 107982673
chr11 66185572 66185862 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 66188475 2613 107982674
chr11 66185582 66185952 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2523 107982675
chr11 66185594 66185934 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2541 107982676
chr11 66185595 66185885 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2590 107982677
chr11 66185599 66185604 ETS2 TRANSFAC yes 66188475 2871 114089795
chr11 66185599 66185889 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2586 107982678
chr11 66185602 66186122 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2353 107982679
chr11 66185603 66185873 SMC3 UCSC Txn Factor no Conserved 66188475 2602 107982680
chr11 66185603 66185873 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2602 107982681
chr11 66185608 66185858 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2617 107982682
chr11 66185613 66185873 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2602 107982683
chr11 66185614 66185628 PLAG1 JASPAR yes 66188475 2847 114089796
chr11 66185614 66185918 ATF3 UCSC Txn Factor no Conserved 66188475 2557 107982684
chr11 66185614 66185918 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2557 107982685
chr11 66185614 66185921 FOSL2 UCSC Txn Factor no Conserved 66188475 2554 107982686
chr11 66185614 66185921 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66188475 2554 107982687
chr11 66185617 66185861 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2614 107982688
chr11 66185618 66185874 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2601 107982689
chr11 66185618 66185885 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2590 107982690
chr11 66185618 66185896 FOS UCSC Txn Factor no Conserved 66188475 2579 107982691
chr11 66185618 66185900 JUND UCSC Txn Factor no Conserved 66188475 2575 107982692
chr11 66185624 66185634 SP1 JASPAR yes 66188475 2841 114089797
chr11 66185624 66185900 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66188475 2575 107982693
chr11 66185626 66185850 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66188475 2625 107982694
chr11 66185626 66185896 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2579 107982695
chr11 66185632 66185636 H1TF2 TRANSFAC yes 66188475 2839 114089798
chr11 66185632 66185636 NFE TRANSFAC yes 66188475 2839 114089799
chr11 66185632 66185636 SRF TRANSFAC yes 66188475 2839 114089800
chr11 66185634 66185878 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2597 107982696
chr11 66185635 66185865 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66188475 2610 107982697
chr11 66185636 66185886 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2589 107982698
chr11 66185646 66185876 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2599 107982699
chr11 66185646 66185890 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2585 107982700
chr11 66185647 66185823 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2652 107982701
chr11 66185651 66185844 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2631 107982702
chr11 66185654 66185918 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2557 107982703
chr11 66185656 66185818 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2657 107982704
chr11 66185656 66185854 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2621 107982705
chr11 66185657 66185873 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2602 107982706
chr11 66185660 66185853 FOSL1 UCSC Txn Factor no Conserved 66188475 2622 107982707
chr11 66185660 66185853 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2622 107982708
chr11 66185660 66185858 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2617 107982709
chr11 66185663 66185851 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 66188475 2624 107982710
chr11 66185663 66185970 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2505 107982711
chr11 66185664 66185817 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2658 107982712
chr11 66185667 66185868 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 66188475 2607 107982713
chr11 66185668 66185821 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2654 107982714
chr11 66185671 66185823 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 66188475 2652 107982715
chr11 66185678 66185699 ZNF263 JASPAR yes 66188475 2776 114089801
chr11 66185681 66185838 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66188475 2637 107982716
chr11 66185683 66185798 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66188475 2677 107982717
chr11 66185683 66185947 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2528 107982718
chr11 66185699 66185785 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2690 107982719
chr11 66185702 66185823 BACH1 UCSC Txn Factor no Conserved 66188475 2652 107982720
chr11 66185702 66185823 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2652 107982721
chr11 66185707 66186025 MEF2A UCSC Txn Factor no Conserved 66188475 2450 107982722
chr11 66185707 66186025 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2450 107982723
chr11 66185709 66185846 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66188475 2629 107982724
chr11 66185713 66185998 MEF2C UCSC Txn Factor no Conserved 66188475 2477 107982725
chr11 66185713 66185998 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2477 107982726
chr11 66185715 66185825 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2650 107982727
chr11 66185721 66185734 SMAD2 JASPAR yes 66188475 2741 114089802
chr11 66185725 66185744 CTCF JASPAR yes 66188475 2731 114089803
chr11 66185731 66186055 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66188475 2420 107982728
chr11 66185732 66185744 E2F8 JASPAR yes 66188475 2731 114089804
chr11 66185735 66186015 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2460 107982729
chr11 66185740 66185758 ESR1 JASPAR yes 66188475 2717 114089805
chr11 66185744 66185754 SREBF1 JASPAR yes 66188475 2721 114089806
chr11 66185744 66185754 SREBF2 JASPAR yes 66188475 2721 114089807
chr11 66185744 66185758 JUN JASPAR yes 66188475 2717 114089808
chr11 66185747 66185758 FOSL2 JASPAR yes 66188475 2717 114089809
chr11 66185747 66185758 JUNB JASPAR yes 66188475 2717 114089810
chr11 66185747 66186013 EGR1 UCSC Txn Factor no Conserved 66188475 2462 107982730
chr11 66185747 66186013 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2462 107982731
chr11 66185748 66185759 FOS JASPAR yes 66188475 2716 114089811
chr11 66185748 66185759 FOSL1 JASPAR yes 66188475 2716 114089812
chr11 66185748 66185759 JUND JASPAR yes 66188475 2716 114089813
chr11 66185749 66185756 JUN TRANSFAC yes 66188475 2719 114089814
chr11 66185749 66185760 JUNB JASPAR yes 66188475 2715 114089815
chr11 66185749 66185760 NFE2L2 JASPAR yes 66188475 2715 114089816
chr11 66185750 66185761 BATF JASPAR yes 66188475 2714 114089817
chr11 66185750 66186006 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 66188475 2469 107982732
chr11 66185755 66185775 ESR1 JASPAR yes 66188475 2700 114089818
chr11 66185759 66185777 ESR2 JASPAR yes 66188475 2698 114089819
chr11 66185760 66185775 ESR2 JASPAR yes 66188475 2700 114089820
chr11 66185760 66185780 ESR1 JASPAR yes 66188475 2695 114089821
chr11 66185761 66185938 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 66188475 2537 107982733
chr11 66185762 66185970 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 66188475 2505 107982734
chr11 66185763 66185777 JUN JASPAR yes 66188475 2698 114089822
chr11 66185765 66185776 BATF JASPAR yes 66188475 2699 114089823
chr11 66185766 66185777 FOSL2 JASPAR yes 66188475 2698 114089824
chr11 66185766 66185777 JUNB JASPAR yes 66188475 2698 114089825
chr11 66185767 66185778 FOS JASPAR yes 66188475 2697 114089826
chr11 66185767 66185778 FOSL1 JASPAR yes 66188475 2697 114089827
chr11 66185767 66185778 JUND JASPAR yes 66188475 2697 114089828
chr11 66185767 66185778 NFE2 JASPAR yes 66188475 2697 114089829
chr11 66185768 66185777 JDP2 JASPAR yes 66188475 2698 114089830
chr11 66185768 66185779 FOSL2 JASPAR yes 66188475 2696 114089831
chr11 66185768 66185779 JUNB JASPAR yes 66188475 2696 114089832
chr11 66185768 66185782 JUN JASPAR yes 66188475 2693 114089833
chr11 66185774 66185789 SOX21 JASPAR yes 66188475 2686 114089834
chr11 66185774 66185790 SOX4 JASPAR yes 66188475 2685 114089835
chr11 66185778 66185787 THAP1 JASPAR yes 66188475 2688 114089836
chr11 66185781 66185796 MEF2A JASPAR yes 66188475 2679 114089837
chr11 66185782 66185797 MEF2C JASPAR yes 66188475 2678 114089838
chr11 66185783 66185795 MEF2A JASPAR yes 66188475 2680 114089839
chr11 66185783 66185795 MEF2B JASPAR yes 66188475 2680 114089840
chr11 66185783 66185795 MEF2D JASPAR yes 66188475 2680 114089841
chr11 66185785 66185789 YY1 TRANSFAC yes 66188475 2686 114089842
chr11 66185803 66185824 REST JASPAR yes 66188475 2651 114089843
chr11 66185823 66185828 SP1 TRANSFAC yes 66188475 2647 114089844
chr11 66185823 66185829 SP1 TRANSFAC yes 66188475 2646 114089845
chr11 66185823 66185830 SP1 TRANSFAC yes 66188475 2645 114089846
chr11 66185823 66185844 ZNF263 JASPAR yes 66188475 2631 114089847
chr11 66185828 66185834 SP1 TRANSFAC yes 66188475 2641 114089848
chr11 66185828 66185838 SP1 JASPAR yes 66188475 2637 114089849
chr11 66185842 66185857 MEF2C JASPAR yes 66188475 2618 114089850
chr11 66185845 66185849 YY1 TRANSFAC yes 66188475 2626 114089851
chr11 66185864 66185879 MEF2C JASPAR yes 66188475 2596 114089852
chr11 66185865 66185880 MEF2A JASPAR yes 66188475 2595 114089853
chr11 66185866 66185878 MEF2A JASPAR yes 66188475 2597 114089854
chr11 66185866 66185878 MEF2B JASPAR yes 66188475 2597 114089855
chr11 66185866 66185878 MEF2D JASPAR yes 66188475 2597 114089856
chr11 66185867 66185877 MEF2A JASPAR yes 66188475 2598 114089857
chr11 66185867 66185879 FOXI1 JASPAR yes 66188475 2596 114089858
chr11 66185868 66185872 TEAD2 TRANSFAC yes 66188475 2603 114089859
chr11 66185868 66185873 TBP TRANSFAC yes 66188475 2602 114089860
chr11 66185868 66185874 TMF TRANSFAC yes 66188475 2601 114089861
chr11 66185876 66185897 REST JASPAR yes 66188475 2578 114089862
SNPs associated with NPAS4[ENSG00000174576.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr11 65205958 rs148397173 G A 982517 Esophagus 0.0965482 2045864
chr11 65885802 rs56314482 G A 302673 Esophagus 0.00986535 2051114
chr11 66401373 rs566673 T G 207195 Breast 0.228629 2053239
chr11 65668077 rs7950010 A C 520398 Spleen 0.435325 2049494
chr11 66149510 rs187050975 C T 38965 Ovary 0.292614 2052539
chr11 67076467 rs76227952 C A,T 882289 Liver 0.162145 2056579
chr11 65476682 rs503129 T C 711793 Lung 0.186536 2047897
Details of NPAS4[ENSG00000174576.4]
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Genomic Location chr11:66188475-66194178[+]
TSS 66188475
Gene Name NPAS4
Ensembl ID ENSG00000174576.4
ENTREZID 266743
Uniprot
Q8IUM7
Protein Name
Neuronal PAS domain-containing protein 4
Expression levels of NPAS4[ENSG00000174576.4]
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