EnhancerDB
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Enhancers that regulate LSM10[ENSG00000181817.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 36760772 36764975 enh78999 36863493 98518
Stomach Prostate (PC-3) Colon (HCT116)
chr1 36813004 36819637 enh11739 36863493 43856
Prostate (PC-3) Esophagus Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Thyroid Lung (PC-9) Muscle (Myoblast) Heart
chr1 36814630 36815106 vista1193 36863493 48387
VISTA
chr1 36815580 36815775 vista1194 36863493 47718
VISTA
chr1 36817040 36817280 vista1195 36863493 46213
VISTA
chr1 36825493 36825742 vista1196 36863493 37751
VISTA
chr1 36829025 36848015 enh242 36863493 15478
Bone Marrow (K562) Liver (HepG2) Blood (OCI-LY7) Stomach Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Uterus Blood (Karpas-422) Neural Stem Cells (H9) Blood (T-cell) Heart
chr1 36839449 36839891 vista1197 36863493 23602
VISTA
chr1 36840093 36840535 vista1198 36863493 22958
VISTA
chr1 36849527 36849580 vista1199 36863493 13913
VISTA
chr1 36853020 36853462 vista1200 36863493 10031
VISTA
chr1 36866636 36866899 vista1201 36863493 3143
VISTA
chr1 36872165 36880195 enh11740 36863493 8672
Bone Marrow (K562) Cervix (HeLa-S3) Bone (Osteoblast) Placenta Colon (HCT116) Lung (PC-9) Blood (T-cell) Epithelial (MCF-7)
chr1 36877889 36878288 vista1202 36863493 14396
VISTA
chr1 36889444 36893776 enh11741 36863493 25951
Placenta Prostate (RWPE1) Lung (PC-9)
chr1 36896565 36903695 enh11742 36863493 33072
Placenta
chr1 36940419 36940497 vista1203 36863493 76926
VISTA
chr1 36952484 36952865 vista1204 36863493 88991
VISTA
chr1 36960885 36965035 enh108317 36863493 97392
Lung (PC-9)
Transcript facotrs that regulate LSM10[ENSG00000181817.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 36865284 36867637 ZNF274 GTRD no Bone Marrow (K562) 36863493 1791 107802843
chr1 36866638 36866657 REST JASPAR yes 36863493 3145 118272343
chr1 36866680 36866690 SP1 JASPAR yes 36863493 3187 118272344
chr1 36866681 36866689 SP1 TRANSFAC yes 36863493 3188 118272345
chr1 36866681 36866690 SP1 TRANSFAC yes 36863493 3188 118272346
chr1 36866682 36866687 SP1 TRANSFAC yes 36863493 3189 118272347
chr1 36866683 36866688 SP1 TRANSFAC yes 36863493 3190 118272348
chr1 36866683 36866689 SP1 TRANSFAC yes 36863493 3190 118272349
chr1 36866687 36866691 LFA1 TRANSFAC yes 36863493 3194 118272350
chr1 36866690 36866704 GLIS3 JASPAR yes 36863493 3197 118272351
chr1 36866697 36866704 SP1 TRANSFAC yes 36863493 3204 118272352
chr1 36866697 36866707 SP1 JASPAR yes 36863493 3204 118272353
chr1 36866698 36866706 SP1 TRANSFAC yes 36863493 3205 118272354
chr1 36866699 36866704 SP1 TRANSFAC yes 36863493 3206 118272355
chr1 36866700 36866705 SP1 TRANSFAC yes 36863493 3207 118272356
chr1 36866700 36866706 SP1 TRANSFAC yes 36863493 3207 118272357
chr1 36866701 36866709 SP1 TRANSFAC yes 36863493 3208 118272358
chr1 36866701 36866709 WT1 TRANSFAC yes 36863493 3208 118272359
chr1 36866775 36866790 RFX5 JASPAR yes 36863493 3282 118272360
chr1 36866793 36866808 RFX5 JASPAR yes 36863493 3300 118272361
chr1 36866804 36866815 ELK4 JASPAR yes 36863493 3311 118272362
chr1 36866804 36866815 FLI1 JASPAR yes 36863493 3311 118272363
chr1 36866805 36866815 ERF JASPAR yes 36863493 3312 118272364
chr1 36866805 36866815 ERG JASPAR yes 36863493 3312 118272365
chr1 36866805 36866815 ETS1 JASPAR yes 36863493 3312 118272366
chr1 36866805 36866815 FLI1 JASPAR yes 36863493 3312 118272367
chr1 36866805 36866815 GABPA JASPAR yes 36863493 3312 118272368
chr1 36866805 36866816 ETV2 JASPAR yes 36863493 3312 118272369
chr1 36866805 36866818 ELF1 JASPAR yes 36863493 3312 118272370
chr1 36866810 36866818 MEIS2 JASPAR yes 36863493 3317 118272371
chr1 36866810 36866818 MEIS3 JASPAR yes 36863493 3317 118272372
chr1 36866811 36866815 NFE TRANSFAC yes 36863493 3318 118272373
chr1 36866812 36866823 USF1 JASPAR yes 36863493 3319 118272374
chr1 36866812 36866824 PKNOX2 JASPAR yes 36863493 3319 118272375
chr1 36866813 36866823 TFE3 JASPAR yes 36863493 3320 118272376
chr1 36866813 36866823 TFEB JASPAR yes 36863493 3320 118272377
chr1 36866813 36866823 TFEC JASPAR yes 36863493 3320 118272378
chr1 36866813 36866824 USF2 JASPAR yes 36863493 3320 118272379
chr1 36866843 36866848 SP1 TRANSFAC yes 36863493 3350 118272380
chr1 36866849 36866861 ELF4 JASPAR yes 36863493 3356 118272381
chr1 36866851 36866861 GABPA JASPAR yes 36863493 3358 118272382
chr1 36866853 36866859 ETS1 JASPAR yes 36863493 3360 118272383
chr1 36866853 36866859 SPI1 JASPAR yes 36863493 3360 118272384
chr1 36866859 36866863 ESR1 TRANSFAC yes 36863493 3366 118272385
SNPs associated with LSM10[ENSG00000181817.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 36835387 rs78285495 G A 21452 Esophagus 0.0719035 233292
chr1 37480065 rs6673114 T C 616572 Heart 0.0106403 236897
chr1 35896675 rs72659615 T C 960164 Breast 0.15079 229440
chr1 37596630 rs12079010 G A 733137 Adrenal 0.170899 237235
Details of LSM10[ENSG00000181817.5]
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Genomic Location chr1:36856839-36863493[-]
TSS 36863493
Gene Name LSM10
Ensembl ID ENSG00000181817.5
ENTREZID 84967
Uniprot
Q969L4
Protein Name
U7 snRNA-associated Sm-like protein LSm10
Expression levels of LSM10[ENSG00000181817.5]
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