EnhancerDB
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Enhancers that regulate TSEN54[ENSG00000182173.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 73411265 73417455 enh52590 73512141 94686
Large Intestine
chr17 73418765 73428832 enh17376 73512141 83309
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Liver Bone (Osteoblast) Stomach Placenta Colon (HCT116) Uterus Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr17 73426423 73426691 vista25979 73512141 85450
VISTA
chr17 73434845 73446815 enh17377 73512141 65326
Bone Marrow (K562) Astrocyte Bone (Osteoblast) Placenta Colon (HCT116) Uterus
chr17 73447245 73452495 enh32360 73512141 59646
Bone Marrow (K562) Liver (HepG2) Large Intestine Astrocyte Epithelial (MCF-7)
chr17 73456096 73456218 vista25980 73512141 55923
VISTA
chr17 73456599 73456615 vista25981 73512141 55526
VISTA
chr17 73462394 73471595 enh62653 73512141 40546
Esophagus Liver (HepG2) Stomach Heart
chr17 73474410 73478836 enh44490 73512141 33305
Muscle (Myotube) Brain (SK-N-SH)
chr17 73514344 73514665 vista25982 73512141 2203
VISTA
chr17 73525565 73534090 enh107725 73512141 13424
Cervix (HeLa-S3) Blood (T-cell)
chr17 73531533 73531826 vista25983 73512141 19392
VISTA
chr17 73541846 73552035 enh17378 73512141 29705
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Esophagus Stomach Placenta Colon (HCT116) Thyroid Pancreas Epithelial (MCF-7)
chr17 73545364 73545732 vista25984 73512141 33223
VISTA
chr17 73546030 73546166 vista25985 73512141 33889
VISTA
chr17 73571945 73577255 enh52591 73512141 59804
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Pancreas Stomach
chr17 73599541 73603669 enh86270 73512141 87400
Colon (HCT116)
Transcript facotrs that regulate TSEN54[ENSG00000182173.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 73514356 73514366 MAX JASPAR yes 73512141 2215 21296436
chr17 73514370 73514374 YY1 TRANSFAC yes 73512141 2229 21296437
chr17 73514398 73514404 YY1 JASPAR yes 73512141 2257 21296438
chr17 73514411 73514421 SP1 JASPAR yes 73512141 2270 21296439
chr17 73514411 73514665 RUNX3 UCSC Txn Factor no Conserved 73512141 2270 108294339
chr17 73514411 73514665 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 73512141 2270 108294340
chr17 73514424 73514436 TFAP2A JASPAR yes 73512141 2283 21296440
chr17 73514424 73514436 TFAP2B JASPAR yes 73512141 2283 21296441
chr17 73514424 73514436 TFAP2C JASPAR yes 73512141 2283 21296442
chr17 73514424 73514439 TFAP2A JASPAR yes 73512141 2283 21296443
chr17 73514424 73514439 TFAP2C JASPAR yes 73512141 2283 21296444
chr17 73514425 73514434 TFAP2A JASPAR yes 73512141 2284 21296445
chr17 73514426 73514435 TFAP2A JASPAR yes 73512141 2285 21296446
chr17 73514442 73514457 NR2C2 JASPAR yes 73512141 2301 21296447
chr17 73514445 73514457 INSM1 JASPAR yes 73512141 2304 21296448
chr17 73514452 73514456 LFA1 TRANSFAC yes 73512141 2311 21296449
chr17 73514454 73514468 GATA2 JASPAR yes 73512141 2313 21296450
chr17 73514456 73514464 GATA3 JASPAR yes 73512141 2315 21296451
chr17 73514456 73514464 GATA5 JASPAR yes 73512141 2315 21296452
chr17 73514460 73514672 SPI1 UCSC Txn Factor no Conserved 73512141 2319 108294341
chr17 73514461 73514476 STAT2 JASPAR yes 73512141 2320 21296453
chr17 73514462 73514671 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 73512141 2321 108294342
chr17 73514468 73514672 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 73512141 2327 108294343
chr17 73514501 73514519 IRF2 JASPAR yes 73512141 2360 21296454
chr17 73514502 73514514 IRF1 JASPAR yes 73512141 2361 21296455
chr17 73514542 73514556 SPI1 JASPAR yes 73512141 2401 21296456
chr17 73514543 73514556 ELF1 JASPAR yes 73512141 2402 21296457
chr17 73514544 73514556 EHF JASPAR yes 73512141 2403 21296458
chr17 73514544 73514556 ELF1 JASPAR yes 73512141 2403 21296459
chr17 73514544 73514556 ELF4 JASPAR yes 73512141 2403 21296460
chr17 73514544 73514557 ELF3 JASPAR yes 73512141 2403 21296461
chr17 73514545 73514556 ELF5 JASPAR yes 73512141 2404 21296462
chr17 73514546 73514552 PEA3 TRANSFAC yes 73512141 2405 21296463
chr17 73514546 73514556 ETV6 JASPAR yes 73512141 2405 21296464
chr17 73514546 73514557 ELK4 JASPAR yes 73512141 2405 21296465
chr17 73514546 73514557 FLI1 JASPAR yes 73512141 2405 21296466
chr17 73514547 73514555 EHF JASPAR yes 73512141 2406 21296467
chr17 73514548 73514555 SPI1 JASPAR yes 73512141 2407 21296468
chr17 73514589 73514599 MZF1 JASPAR yes 73512141 2448 21296469
chr17 73514592 73514612 PPARG JASPAR yes 73512141 2451 21296470
chr17 73514594 73514612 NR3C1 JASPAR yes 73512141 2453 21296471
chr17 73514597 73514609 TEAD1 JASPAR yes 73512141 2456 21296472
chr17 73514598 73514612 GATA2 JASPAR yes 73512141 2457 21296473
chr17 73514602 73514610 GATA3 JASPAR yes 73512141 2461 21296474
chr17 73514602 73514610 GATA5 JASPAR yes 73512141 2461 21296475
chr17 73514613 73514620 SPIB JASPAR yes 73512141 2472 21296476
SNPs associated with TSEN54[ENSG00000182173.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 73514485 rs56140056 T G 0 Esophagus 3.32086e-06 5057555
chr17 73512363 rs72851941 C T 0 Esophagus 0.000298475 5057540
chr17 73512363 rs72851941 C T 0 Heart 0.00195703 5057540
chr17 74460124 rs79796247 G C 939304 Breast 0.0777141 5063343
chr17 73426110 rs35171086 G A 86031 Liver 0.41547 5056969
chr17 73442469 rs73360239 C T 69672 Lung 0.0174998 5057179
Details of TSEN54[ENSG00000182173.8]
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Genomic Location chr17:73512141-73520820[+]
TSS 73512141
Gene Name TSEN54
Ensembl ID ENSG00000182173.8
ENTREZID 283989
Uniprot
Q7Z6J9
Protein Name
tRNA-splicing endonuclease subunit Sen54
Expression levels of TSEN54[ENSG00000182173.8]
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