EnhancerDB
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Enhancers that regulate PALM3[ENSG00000187867.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr19 14084259 14088409 enh65176 14169971 81562
Heart
chr19 14084978 14085262 vista28728 14169971 84709
VISTA
chr19 14089228 14089566 vista28729 14169971 80405
VISTA
chr19 14090424 14102535 enh5017 14169971 67436
Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Blood (T-cell) Astrocyte Blood (OCI-LY7) Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Neural Stem Cells (H9) Thymus Heart
chr19 14097142 14097697 vista28730 14169971 72274
VISTA
chr19 14109565 14116695 enh5018 14169971 53276
Blood (T-cell) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Colon (HCT116) Blood (Karpas-422) Thymus Heart
chr19 14115648 14116111 vista28731 14169971 53860
VISTA
chr19 14124025 14132463 enh52851 14169971 37508
Liver (HepG2) Large Intestine Blood (OCI-LY7) Peripheral Blood (MM.1S) Stomach
chr19 14126359 14126500 vista28732 14169971 43471
VISTA
chr19 14144065 14150515 enh17934 14169971 19456
Placenta Heart
chr19 14151925 14156075 enh107755 14169971 13896
Blood (T-cell)
chr19 14172809 14173223 vista28733 14169971 2838
VISTA
chr19 14189294 14189532 vista28734 14169971 19323
VISTA
chr19 14190971 14191218 vista28735 14169971 21000
VISTA
chr19 14221885 14227835 enh5019 14169971 51914
Uterus Blood (Karpas-422)
chr19 14229419 14229865 vista28736 14169971 59448
VISTA
chr19 14237085 14241235 enh104517 14169971 67114
Peripheral Blood (MM.1S)
chr19 14241315 14241555 vista28737 14169971 71344
VISTA
chr19 14249278 14249642 vista28738 14169971 79307
VISTA
chr19 14254085 14258335 enh112596 14169971 84114
Brain (SK-N-MC)
Transcript facotrs that regulate PALM3[ENSG00000187867.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr19 14172774 14173084 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 14169971 2803 108391059
chr19 14172844 14172859 TFAP2C JASPAR yes 14169971 2873 70811583
chr19 14172845 14172857 TFAP2A JASPAR yes 14169971 2874 70811584
chr19 14172845 14172857 TFAP2B JASPAR yes 14169971 2874 70811585
chr19 14172855 14172868 TFAP2A JASPAR yes 14169971 2884 70811586
chr19 14172855 14172868 TFAP2B JASPAR yes 14169971 2884 70811587
chr19 14172855 14172868 TFAP2C JASPAR yes 14169971 2884 70811588
chr19 14172886 14172896 SP1 JASPAR yes 14169971 2915 70811589
chr19 14172886 14172896 ZNF740 JASPAR yes 14169971 2915 70811590
chr19 14172887 14172897 SP1 JASPAR yes 14169971 2916 70811591
chr19 14172887 14172897 ZNF740 JASPAR yes 14169971 2916 70811592
chr19 14172888 14172898 ZNF740 JASPAR yes 14169971 2917 70811593
chr19 14172894 14172909 ZIC4 JASPAR yes 14169971 2923 70811594
chr19 14172898 14172907 THAP1 JASPAR yes 14169971 2927 70811595
chr19 14172901 14172906 SP1 TRANSFAC yes 14169971 2930 70811596
chr19 14172902 14172907 SP1 TRANSFAC yes 14169971 2931 70811597
chr19 14172902 14172911 HIC2 JASPAR yes 14169971 2931 70811598
chr19 14172905 14172909 LFA1 TRANSFAC yes 14169971 2934 70811599
chr19 14172921 14172925 H4TF2 TRANSFAC yes 14169971 2950 70811600
chr19 14172944 14172949 SP1 TRANSFAC yes 14169971 2973 70811601
chr19 14172966 14172976 SP1 JASPAR yes 14169971 2995 70811602
chr19 14172968 14172980 INSM1 JASPAR yes 14169971 2997 70811603
chr19 14172983 14172987 LFA1 TRANSFAC yes 14169971 3012 70811604
chr19 14172992 14172997 TFAP2A TRANSFAC yes 14169971 3021 70811605
chr19 14172992 14172998 MZF1 JASPAR yes 14169971 3021 70811606
chr19 14172998 14173019 REST JASPAR yes 14169971 3027 70811607
chr19 14173002 14173006 NFE TRANSFAC yes 14169971 3031 70811608
chr19 14173004 14173014 MSC JASPAR yes 14169971 3033 70811609
chr19 14173004 14173014 TFAP4 JASPAR yes 14169971 3033 70811610
chr19 14173009 14173013 NFE TRANSFAC yes 14169971 3038 70811611
chr19 14173014 14173030 POU4F2 JASPAR yes 14169971 3043 70811612
chr19 14173014 14173030 POU4F3 JASPAR yes 14169971 3043 70811613
chr19 14173016 14173030 POU4F1 JASPAR yes 14169971 3045 70811614
chr19 14173016 14173031 HNF1A JASPAR yes 14169971 3045 70811615
chr19 14173017 14173030 HNF1B JASPAR yes 14169971 3046 70811616
chr19 14173017 14173031 POU4F1 JASPAR yes 14169971 3046 70811617
chr19 14173017 14173033 POU4F3 JASPAR yes 14169971 3046 70811618
chr19 14173028 14173043 TFAP2A JASPAR yes 14169971 3057 70811619
chr19 14173028 14173043 TFAP2C JASPAR yes 14169971 3057 70811620
chr19 14173043 14173049 LEF1 TRANSFAC yes 14169971 3072 70811621
chr19 14173043 14173049 SOX10 JASPAR yes 14169971 3072 70811622
chr19 14173044 14173234 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 14169971 3073 108391060
chr19 14173052 14173064 NHLH1 JASPAR yes 14169971 3081 70811623
chr19 14173053 14173063 NHLH1 JASPAR yes 14169971 3082 70811624
chr19 14173066 14173072 ETS1 JASPAR yes 14169971 3095 70811625
chr19 14173067 14173075 FOXO3 JASPAR yes 14169971 3096 70811626
chr19 14173076 14173086 TBR1 JASPAR yes 14169971 3105 70811627
chr19 14173090 14173094 ESR1 TRANSFAC yes 14169971 3119 70811628
chr19 14173098 14173108 ZNF740 JASPAR yes 14169971 3127 70811629
chr19 14173119 14173132 NFKB1 JASPAR yes 14169971 3148 70811630
chr19 14173119 14173132 NFKB2 JASPAR yes 14169971 3148 70811631
chr19 14173125 14173137 INSM1 JASPAR yes 14169971 3154 70811632
chr19 14173131 14173150 CTCF JASPAR yes 14169971 3160 70811633
chr19 14173148 14173152 YY1 TRANSFAC yes 14169971 3177 70811634
chr19 14173155 14173165 NFIA JASPAR yes 14169971 3184 70811635
chr19 14173156 14173165 NFIX JASPAR yes 14169971 3185 70811636
chr19 14173157 14173163 NFIC JASPAR yes 14169971 3186 70811637
chr19 14173165 14173169 H1TF2 TRANSFAC yes 14169971 3194 70811638
chr19 14173165 14173169 NFE TRANSFAC yes 14169971 3194 70811639
chr19 14173165 14173169 SRF TRANSFAC yes 14169971 3194 70811640
chr19 14173180 14173194 TLX1 JASPAR yes 14169971 3209 70811641
chr19 14173181 14173195 TLX1 JASPAR yes 14169971 3210 70811642
chr19 14173189 14173195 NFIC JASPAR yes 14169971 3218 70811643
SNPs associated with PALM3[ENSG00000187867.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr19 14593067 rs116892701 A G 423096 Esophagus 0.109427 5456734
chr19 13597652 rs55841086 C G,T 566525 Heart 0.209615 5450115
chr19 13891096 rs62111898 C T 273081 Heart 0.217172 5451576
chr19 14172921 rs10415758 A T 2950 Pancreas 2.39089e-48 5453568
chr19 14172896 rs7252372 G C,T 2925 Breast 0.000937262 5453566
chr19 13229501 rs8111717 T G 934676 Spleen 0.149496 5448854
chr19 14473157 rs762277649 T TAG 303186 Uterus 0.247319 5455670
chr19 14172921 rs10415758 A T 2950 Liver 0.00114451 5453568
chr19 14172921 rs10415758 A T 2950 Lung 1.34842e-78 5453568
chr19 14172951 rs10421262 T G 2980 Stomach 5.30029e-13 5453570
chr19 13998079 rs142492623 C T 166098 Adrenal 0.247467 5452423
Details of PALM3[ENSG00000187867.4]
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Genomic Location chr19:14164177-14169971[-]
TSS 14169971
Gene Name PALM3
Ensembl ID ENSG00000187867.4
ENTREZID 342979
Uniprot
A6NDB9
Protein Name
Paralemmin-3
Expression levels of PALM3[ENSG00000187867.4]
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