EnhancerDB
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Enhancers that regulate HLA-A[ENSG00000206503.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 29810408 29815489 enh59607 29909037 93548
Skin (Keratinocyte) Colon (HCT116) Lung (PC-9) Epithelial (MCF-7)
chr6 29829189 29829211 vista51499 29909037 79826
VISTA
chr6 29853085 29858955 enh90371 29909037 50082
Pancreas (Panc1) Uterus Prostate (RWPE1)
chr6 29873945 29882855 enh55707 29909037 26182
Liver (HepG2) Large Intestine
chr6 29890543 29897615 enh9027 29909037 11422
Cervix (HeLa-S3) Bone (Osteoblast) Colon (HCT116) Blood (Karpas-422) Pancreas (Panc1) Uterus
chr6 29912705 29925859 enh66187 29909037 3668
Prostate (PC-3) Brain (SK-N-SH) Colon (HCT116) Pancreas (Panc1) Blood (T-cell) Heart
chr6 29930235 29938316 enh9028 29909037 21198
Liver Astrocyte Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr6 29932777 29932958 vista51500 29909037 23740
VISTA
chr6 29933738 29934144 vista51501 29909037 24701
VISTA
chr6 29935319 29935652 vista51502 29909037 26282
VISTA
chr6 29941265 29948475 enh91683 29909037 32228
Bone Marrow (K562) Uterus Bone (Osteoblast)
chr6 29949488 29949840 vista51503 29909037 40451
VISTA
chr6 29958745 29966635 enh55708 29909037 49708
Prostate (RWPE1) Cervix (HeLa-S3) Large Intestine
chr6 29972145 29976775 enh100491 29909037 63108
Uterus
chr6 30003045 30007195 enh110607 29909037 94008
Adrenal
chr6 30007745 30014615 enh38940 29909037 98708
Astrocyte Liver (HepG2) Blood (GM12878)
Transcript facotrs that regulate HLA-A[ENSG00000206503.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr6 29912707 29912726 REST JASPAR yes 29909037 3670 101016280
chr6 29912711 29912716 SP1 TRANSFAC yes 29909037 3674 101016281
chr6 29912727 29912737 TBX21 JASPAR yes 29909037 3690 101016282
chr6 29912733 29912737 YY1 TRANSFAC yes 29909037 3696 101016283
chr6 29912734 29912745 STAT1 JASPAR yes 29909037 3697 101016284
chr6 29912735 29912750 HSF1 JASPAR yes 29909037 3698 101016285
chr6 29912736 29912749 HSF1 JASPAR yes 29909037 3699 101016286
chr6 29912736 29912749 HSF2 JASPAR yes 29909037 3699 101016287
chr6 29912736 29912749 HSF4 JASPAR yes 29909037 3699 101016288
chr6 29912754 29912758 H4TF2 TRANSFAC yes 29909037 3717 101016289
chr6 29912771 29912778 SPIB JASPAR yes 29909037 3734 101016290
chr6 29912806 29912811 GATA1 TRANSFAC yes 29909037 3769 101016291
chr6 29912813 29912831 NR3C1 JASPAR yes 29909037 3776 101016292
chr6 29912814 29912831 NR3C1 JASPAR yes 29909037 3777 101016293
chr6 29912814 29912831 NR3C2 JASPAR yes 29909037 3777 101016294
chr6 29912819 29912823 YY1 TRANSFAC yes 29909037 3782 101016295
chr6 29912833 29912839 GATA3 JASPAR yes 29909037 3796 101016296
chr6 29912869 29912876 NKX3-1 JASPAR yes 29909037 3832 101016297
chr6 29912895 29912899 H4TF2 TRANSFAC yes 29909037 3858 101016298
chr6 29912903 29912908 GATA2 JASPAR yes 29909037 3866 101016299
chr6 29912919 29912932 TFAP2A JASPAR yes 29909037 3882 101016300
chr6 29912919 29912932 TFAP2B JASPAR yes 29909037 3882 101016301
chr6 29912919 29912932 TFAP2C JASPAR yes 29909037 3882 101016302
chr6 29912926 29912937 NFKB1 JASPAR yes 29909037 3889 101016303
chr6 29912934 29912954 RREB1 JASPAR yes 29909037 3897 101016304
chr6 29912938 29912959 ZNF263 JASPAR yes 29909037 3901 101016305
chr6 29912988 29913003 MEF2C JASPAR yes 29909037 3951 101016306
chr6 29912994 29913000 TCF4 TRANSFAC yes 29909037 3957 101016307
chr6 29913001 29913013 INSM1 JASPAR yes 29909037 3964 101016308
chr6 29913009 29913027 ESR1 JASPAR yes 29909037 3972 101016309
chr6 29913021 29913030 TFAP2A JASPAR yes 29909037 3984 101016310
chr6 29913053 29913068 PRDM1 JASPAR yes 29909037 4016 101016311
chr6 29913080 29913100 RREB1 JASPAR yes 29909037 4043 101016312
chr6 29913094 29913099 SP1 TRANSFAC yes 29909037 4057 101016313
chr6 29913107 29913120 ZBTB18 JASPAR yes 29909037 4070 101016314
chr6 29913108 29913120 NHLH1 JASPAR yes 29909037 4071 101016315
chr6 29913109 29913119 NHLH1 JASPAR yes 29909037 4072 101016316
chr6 29913109 29913119 TFAP4 JASPAR yes 29909037 4072 101016317
chr6 29913168 29913178 TBX21 JASPAR yes 29909037 4131 101016318
chr6 29913168 29913179 TBX20 JASPAR yes 29909037 4131 101016319
chr6 29913168 29913179 TBX2 JASPAR yes 29909037 4131 101016320
chr6 29913168 29913181 EOMES JASPAR yes 29909037 4131 101016321
chr6 29913169 29913177 MGA JASPAR yes 29909037 4132 101016322
chr6 29913169 29913177 TBX15 JASPAR yes 29909037 4132 101016323
chr6 29913169 29913177 TBX1 JASPAR yes 29909037 4132 101016324
chr6 29913169 29913177 TBX4 JASPAR yes 29909037 4132 101016325
chr6 29913169 29913177 TBX5 JASPAR yes 29909037 4132 101016326
chr6 29913169 29913179 TBR1 JASPAR yes 29909037 4132 101016327
chr6 29913174 29913190 GLIS1 JASPAR yes 29909037 4137 101016328
chr6 29913175 29913189 ZIC1 JASPAR yes 29909037 4138 101016329
chr6 29913175 29913190 ZIC4 JASPAR yes 29909037 4138 101016330
chr6 29913191 29913196 GATA2 JASPAR yes 29909037 4154 101016331
chr6 29913212 29913216 YY1 TRANSFAC yes 29909037 4175 101016332
chr6 29913224 29913237 SMAD2 JASPAR yes 29909037 4187 101016333
chr6 29913231 29913243 PKNOX1 JASPAR yes 29909037 4194 101016334
chr6 29913231 29913243 PKNOX2 JASPAR yes 29909037 4194 101016335
chr6 29913231 29913243 TGIF2 JASPAR yes 29909037 4194 101016336
chr6 29913232 29913242 MSC JASPAR yes 29909037 4195 101016337
chr6 29913232 29913242 MYF6 JASPAR yes 29909037 4195 101016338
chr6 29913261 29913281 PPARG JASPAR yes 29909037 4224 101016339
chr6 29913282 29913288 SOX10 JASPAR yes 29909037 4245 101016340
chr6 29913297 29913312 SOX21 JASPAR yes 29909037 4260 101016341
chr6 29913297 29913313 SOX4 JASPAR yes 29909037 4260 101016342
chr6 29913305 29913311 LEF1 TRANSFAC yes 29909037 4268 101016343
chr6 29913305 29913311 SOX10 JASPAR yes 29909037 4268 101016344
chr6 29913314 29913320 TCF4 TRANSFAC yes 29909037 4277 101016345
chr6 29913320 29913330 ID4 JASPAR yes 29909037 4283 101016346
chr6 29913320 29913330 TCF3 JASPAR yes 29909037 4283 101016347
chr6 29913320 29913330 TCF4 JASPAR yes 29909037 4283 101016348
chr6 29913321 29913330 SNAI2 JASPAR yes 29909037 4284 101016349
chr6 29913321 29913332 GCM1 JASPAR yes 29909037 4284 101016350
chr6 29913322 29913327 USF2 TRANSFAC yes 29909037 4285 101016351
chr6 29913327 29913337 MAX JASPAR yes 29909037 4290 101016352
chr6 29913360 29913370 SP1 JASPAR yes 29909037 4323 101016353
chr6 29913363 29913368 SP1 TRANSFAC yes 29909037 4326 101016354
chr6 29913365 29913370 TFAP2A TRANSFAC yes 29909037 4328 101016355
chr6 29913365 29913371 MZF1 JASPAR yes 29909037 4328 101016356
chr6 29913369 29913381 GLI2 JASPAR yes 29909037 4332 101016357
chr6 29913369 29913381 ZBTB7B JASPAR yes 29909037 4332 101016358
chr6 29913369 29913381 ZBTB7C JASPAR yes 29909037 4332 101016359
chr6 29913375 29913385 SP1 JASPAR yes 29909037 4338 101016360
chr6 29913376 29913386 SP1 JASPAR yes 29909037 4339 101016361
chr6 29913378 29913388 ZNF740 JASPAR yes 29909037 4341 101016362
chr6 29913379 29913389 GCM2 JASPAR yes 29909037 4342 101016363
chr6 29913382 29913402 ESR1 JASPAR yes 29909037 4345 101016364
chr6 29913386 29913404 ESR2 JASPAR yes 29909037 4349 101016365
chr6 29913396 29913406 RORA JASPAR yes 29909037 4359 101016366
chr6 29913412 29913427 HNF4A JASPAR yes 29909037 4375 101016367
chr6 29913413 29913428 HNF4G JASPAR yes 29909037 4376 101016368
chr6 29913420 29913431 E2F6 JASPAR yes 29909037 4383 101016369
chr6 29913422 29913443 ZNF263 JASPAR yes 29909037 4385 101016370
chr6 29913427 29913433 MZF1 JASPAR yes 29909037 4390 101016371
chr6 29913430 29913434 H1TF2 TRANSFAC yes 29909037 4393 101016372
chr6 29913430 29913434 NFE TRANSFAC yes 29909037 4393 101016373
chr6 29913430 29913434 SRF TRANSFAC yes 29909037 4393 101016374
chr6 29913436 29913450 STAT1 JASPAR yes 29909037 4399 101016375
chr6 29913437 29913448 ETV2 JASPAR yes 29909037 4400 101016376
chr6 29913455 29913460 SP1 TRANSFAC yes 29909037 4418 101016377
chr6 29913456 29913470 PLAG1 JASPAR yes 29909037 4419 101016378
chr6 29913479 29913483 NFE TRANSFAC yes 29909037 4442 101016379
chr6 29913508 29913511 MYB TRANSFAC yes 29909037 4471 101016380
chr6 29913509 29913523 SPI1 JASPAR yes 29909037 4472 101016381
chr6 29913515 29913520 ETS2 TRANSFAC yes 29909037 4478 101016382
chr6 29913522 29913532 HOXB13 JASPAR yes 29909037 4485 101016383
chr6 29913523 29913538 MEF2C JASPAR yes 29909037 4486 101016384
chr6 29913524 29913539 MEF2A JASPAR yes 29909037 4487 101016385
chr6 29913525 29913537 MEF2A JASPAR yes 29909037 4488 101016386
chr6 29913525 29913537 MEF2B JASPAR yes 29909037 4488 101016387
chr6 29913525 29913537 MEF2D JASPAR yes 29909037 4488 101016388
chr6 29913526 29913536 MEF2A JASPAR yes 29909037 4489 101016389
chr6 29913544 29913548 TEAD2 TRANSFAC yes 29909037 4507 101016390
chr6 29913544 29913549 TBP TRANSFAC yes 29909037 4507 101016391
chr6 29913544 29913550 TMF TRANSFAC yes 29909037 4507 101016392
chr6 29913583 29913596 DUXA JASPAR yes 29909037 4546 101016393
chr6 29913586 29913596 POU6F2 JASPAR yes 29909037 4549 101016394
chr6 29913587 29913597 ALX3 JASPAR yes 29909037 4550 101016395
chr6 29913587 29913597 ESX1 JASPAR yes 29909037 4550 101016396
chr6 29913587 29913597 GSX2 JASPAR yes 29909037 4550 101016397
chr6 29913587 29913597 HESX1 JASPAR yes 29909037 4550 101016398
chr6 29913587 29913597 LHX6 JASPAR yes 29909037 4550 101016399
chr6 29913587 29913597 MIXL1 JASPAR yes 29909037 4550 101016400
chr6 29913587 29913597 MNX1 JASPAR yes 29909037 4550 101016401
chr6 29913587 29913597 NOTO JASPAR yes 29909037 4550 101016402
chr6 29913587 29913597 RAX JASPAR yes 29909037 4550 101016403
chr6 29913588 29913596 ISX JASPAR yes 29909037 4551 101016404
chr6 29913588 29913596 LMX1A JASPAR yes 29909037 4551 101016405
chr6 29913588 29913596 LMX1B JASPAR yes 29909037 4551 101016406
chr6 29913588 29913596 NKX6-1 JASPAR yes 29909037 4551 101016407
chr6 29913588 29913596 NKX6-2 JASPAR yes 29909037 4551 101016408
chr6 29913588 29913596 PRRX1 JASPAR yes 29909037 4551 101016409
chr6 29913588 29913596 RAX2 JASPAR yes 29909037 4551 101016410
chr6 29913588 29913596 SHOX JASPAR yes 29909037 4551 101016411
chr6 29913588 29913596 UNCX JASPAR yes 29909037 4551 101016412
chr6 29913588 29913596 VAX1 JASPAR yes 29909037 4551 101016413
chr6 29913643 29913658 HSF1 JASPAR yes 29909037 4606 101016414
chr6 29913644 29913657 HSF1 JASPAR yes 29909037 4607 101016415
chr6 29913644 29913657 HSF2 JASPAR yes 29909037 4607 101016416
chr6 29913644 29913657 HSF4 JASPAR yes 29909037 4607 101016417
chr6 29913657 29913667 CLOCK JASPAR yes 29909037 4620 101016418
chr6 29913657 29913667 MAX JASPAR yes 29909037 4620 101016419
chr6 29913657 29913667 MNT JASPAR yes 29909037 4620 101016420
chr6 29913658 29913665 USF1 JASPAR yes 29909037 4621 101016421
chr6 29913658 29913668 MAX JASPAR yes 29909037 4621 101016422
chr6 29913659 29913664 MYC TRANSFAC yes 29909037 4622 101016423
chr6 29913659 29913664 USF1 TRANSFAC yes 29909037 4622 101016424
chr6 29913659 29913664 USF2 TRANSFAC yes 29909037 4622 101016425
chr6 29913665 29913685 RREB1 JASPAR yes 29909037 4628 101016426
chr6 29913668 29913683 MAFK JASPAR yes 29909037 4631 101016427
chr6 29913671 29913687 NFYA JASPAR yes 29909037 4634 101016428
chr6 29913686 29913707 ZNF263 JASPAR yes 29909037 4649 101016429
chr6 29913709 29913718 HIC2 JASPAR yes 29909037 4672 101016430
chr6 29913713 29913728 STAT2 JASPAR yes 29909037 4676 101016431
chr6 29913714 29913728 STAT1 JASPAR yes 29909037 4677 101016432
chr6 29913739 29913751 SRF JASPAR yes 29909037 4702 101016433
chr6 29913741 29913752 RUNX1 JASPAR yes 29909037 4704 101016434
chr6 29913741 29913753 GLI2 JASPAR yes 29909037 4704 101016435
chr6 29913747 29913751 ESR1 TRANSFAC yes 29909037 4710 101016436
chr6 29913754 29913763 ZEB1 JASPAR yes 29909037 4717 101016437
chr6 29913757 29913762 USF2 TRANSFAC yes 29909037 4720 101016438
chr6 29913761 29913767 ESR1 TRANSFAC yes 29909037 4724 101016439
chr6 29913763 29913767 ESR1 TRANSFAC yes 29909037 4726 101016440
chr6 29913769 29913775 TCF4 TRANSFAC yes 29909037 4732 101016441
chr6 29913779 29913788 SOX9 JASPAR yes 29909037 4742 101016442
chr6 29913781 29913792 ESRRA JASPAR yes 29909037 4744 101016443
chr6 29913781 29913792 ESRRB JASPAR yes 29909037 4744 101016444
chr6 29913850 29913862 GLI2 JASPAR yes 29909037 4813 101016445
chr6 29913850 29913862 ZBTB7B JASPAR yes 29909037 4813 101016446
chr6 29913850 29913862 ZBTB7C JASPAR yes 29909037 4813 101016447
chr6 29913856 29913860 H4TF2 TRANSFAC yes 29909037 4819 101016448
chr6 29913894 29913914 TP53 JASPAR yes 29909037 4857 101016449
chr6 29913906 29913910 NFE TRANSFAC yes 29909037 4869 101016450
chr6 29913920 29913928 EHF JASPAR yes 29909037 4883 101016451
chr6 29913938 29913943 ETS2 TRANSFAC yes 29909037 4901 101016452
chr6 29913946 29913967 IRF1 JASPAR yes 29909037 4909 101016453
chr6 29913949 29913953 YY1 TRANSFAC yes 29909037 4912 101016454
chr6 29913950 29913962 IRF1 JASPAR yes 29909037 4913 101016455
chr6 29913950 29913964 ONECUT1 JASPAR yes 29909037 4913 101016456
chr6 29913950 29913964 ONECUT2 JASPAR yes 29909037 4913 101016457
chr6 29913950 29913964 ONECUT3 JASPAR yes 29909037 4913 101016458
chr6 29913965 29913969 H1TF2 TRANSFAC yes 29909037 4928 101016459
chr6 29913965 29913969 NFE TRANSFAC yes 29909037 4928 101016460
chr6 29913965 29913969 SRF TRANSFAC yes 29909037 4928 101016461
chr6 29913977 29913982 ETS2 TRANSFAC yes 29909037 4940 101016462
chr6 29913980 29913990 TFCP2 JASPAR yes 29909037 4943 101016463
chr6 29913994 29913998 YY1 TRANSFAC yes 29909037 4957 101016464
chr6 29914003 29914013 SP1 JASPAR yes 29909037 4966 101016465
chr6 29914004 29914011 CEBPA TRANSFAC yes 29909037 4967 101016466
chr6 29914011 29914015 H4TF2 TRANSFAC yes 29909037 4974 101016467
chr6 29914030 29914042 MYBL1 JASPAR yes 29909037 4993 101016468
chr6 29914035 29914038 MYB TRANSFAC yes 29909037 4998 101016469
SNPs associated with HLA-A[ENSG00000206503.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 29921173 rs9260526 G A 7512 Esophagus 6.90507e-20 8944162
chr6 29923091 rs9260620 T G 9430 Esophagus 1.50376e-23 8944307
chr6 29935806 rs2517674 G T 22145 Heart 3.94134e-22 8944678
chr6 29924247 rs9260663 C T 10586 Heart 4.22629e-20 8944387
chr6 29917535 rs114832186 C A 3874 Breast 3.87016e-11 8943876
chr6 29923817 rs404046 G A,T 10156 Spleen 0.0408467 8944369
chr6 29912333 rs3179982 C T 0 Ovary 1.23502e-05 8943513
chr6 29921302 rs2517704 T C 7641 Liver 8.117e-08 8944181
chr6 29924130 rs9260657 C T 10469 Lung 5.07026e-18 8944377
chr6 29854954 rs1611605 G A,T 54083 Stomach 1.95584e-08 8942409
chr6 29923091 rs9260620 T G 9430 Adrenal 1.50605e-06 8944307
Details of HLA-A[ENSG00000206503.7]
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Genomic Location chr6:29909037-29913661[+]
TSS 29909037
Gene Name HLA-A
Ensembl ID ENSG00000206503.7
ENTREZID 3105
Uniprot
O78126
P04439
B2R7U3
B1PKY1
Q5SUL5
P30443
Protein Name
A-3 alpha chain
HLA class I antigen
HLA class I histocompatibility antigen
HLA-A
HLA-A protein
MHC Class I Antigen
MHC Class I antigen
MHC class I
MHC class I antigen
MHC class I antigene
MHC class II antigen
Truncated MHC class I antigen
Expression levels of HLA-A[ENSG00000206503.7]
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