EnhancerDB
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  3. rs11956596[chr5:172200813]
Enhancers that have rs11956596[chr5:172200813]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172198673 172201009 vista1399
VISTA
chr5 172200337 172200842 vista50165
VISTA
chr5 172200585 172237795 enh22816
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs11956596[chr5:172200813]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172200804 172200819 RFX5 JASPAR yes 67824708
chr5 172200804 172200819 RFX5 JASPAR yes 70762916
chr5 172200804 172200819 RFX5 JASPAR yes 111955715
chr5 172200813 172200823 NKX2-3 JASPAR yes 67824709
chr5 172200813 172200823 NKX2-3 JASPAR yes 70762917
chr5 172200813 172200823 NKX2-3 JASPAR yes 111955716
Genes associated with rs11956596[chr5:172200813], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More